Salvia miltiorrhiza (redroot sage): 131007079
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Entry
131007079 CDS
T09291
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
131007079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smil03400
]
131007079
Enzymes [BR:
smil01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
131007079
DNA repair and recombination proteins [BR:
smil03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
131007079
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
131007079
NCBI-ProteinID:
XP_057790203
LinkDB
All DBs
Position
1:23565007..23582155
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AA seq
1211 aa
AA seq
DB search
MSETKFSVMVSLFNWMQKSKSSSLKRSKFRKFLDTFCRPRNGADYFAAIRLILPALDRER
GSYGLREHVLATCIIDALGISRDSPDSQRLINWRKGGAKSGAFAGNFALVAAEVLQRRQG
MSSGDLTIVELNELLDRLATSDNRSEKISVLSELIRKTNVQEMKWIIMIILKDLKLGISE
KSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRSQRHKRQDIEVGKPVRPQLALRVSNAAAA
WKKLHGKEVVVECKFDGDRIQIHKNGAEINFFSRNFLDHPEYGYGMLDIIRENILVDRCI
LDGEMLVWDKSANRFAEFGSNQEIAKAAKDGLDSDRQLCYVAFDILYVGDTSVIHQSLKE
RHQLLQQYVKPIAGCFEILVPNGGLNTHRPAGEPCWSLIVHDVDGVEKFFKETIENRDEG
IVLKDLGSKWEPSDRSAKWMKLKPDYIRAGSDLDTLIIGGYYGSGRHGGEVAQFLVGLAE
RPSPNTYPKRFLSFCRVGTGLSDEELNAVVTKLKPYFRKYEYPKKLPPSFYQVTNNSKER
PDVWIESPEKSVIVSITSDIRTIRSEVFAAPYSLRFPRIDRVRYDKPWHECLDVQSFVEL
VHSSNGTMQRVMDDTVILENNPRRKVSRGTKKNVSVVPSHFIQTDVSRVKGETSIFSDMI
FYFVNVPILHSLDSLHKMVVENGGTFSMNLNSSVTHCIASESKGIKFQAAKRQGDVIHYS
WLLECCMQKQLLPLQPKYFLFLSEATKKKLEEEVDEFSDSYYLDLNVTELEQILNNIDKI
EDSKAKEYCKKFCPREEWVRFHGCRVYFHLPRQSLKYRNWEVPFELAIRRMKIEICIGGG
SIADTLSHATHLVIVSIPELGYDFDTLLNSFSEAQRHLLHRRSLQIVKSQWLDDCFEKDQ
KLPEDIYSLKPQQFQQISSGESDEHKLAGEEHHSSSRDASSSFGGAREETAAPHKPRVAR
KRRKGEPSGTSIGKSKPLVNPSRKTRPRAGKKPAKISEYESDNGASSGDKEDFEASSADC
GSSRKVDNRRRAALTQPRRARARLRNKPVEINEHESDEDHAAPVGVEVENFKPNQRLCGT
SSQQPVTDLRQTEALKDSIPDTGKAVEQGVTESSHYKQSFDESGIGQSSSTQHKNRSEDK
VDLVQAMLLNMLPALAMKKVESVGPVREEADTRAPDPVKEEDQLGKEEEKQAVKKRKVSY
KDVASQLLKDW
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaaaccaagttcagtgtaatggtgagcctcttcaactggatgcagaagagcaag
tcgtcgtctcttaagcgttccaaattccgcaagtttctcgacaccttctgccgcccccga
aacggcgccgactacttcgccgccatccgcctcatcctccccgccctcgaccgcgagcgc
ggctcctatggccttcgcgagcacgtcctcgctacctgtatcatcgacgccctcggcatc
tctcgcgactcccccgactcccagcgcctcatcaactggcgcaagggcggcgccaagtcc
ggtgccttcgctggaaacttcgctctcgtcgccgccgaggtgcttcagcggaggcaggga
atgtcttcaggggaccttactatagtcgagttaaatgaattacttgatcgtttggccact
tctgataataggtcagaaaagatctccgttctttcagagctgatcagaaaaacaaatgtt
caagaaatgaagtggataatcatgataattctcaaagatcttaagttggggataagtgaa
aagagcatatttcatgaatttcaccctgatgctgaggacttgttcaatgtcacctgtgat
ctaaaactagtttgtgaaaagttacgagatcgtagccagcggcataagcgacaggacatt
gaagttggaaaacctgtccgacctcaactagctttgagggtcagcaatgcggctgctgcc
tggaaaaagcttcatggaaaggaagtagtcgttgagtgcaaatttgatggtgatcgcatc
caaatccataaaaatggagctgaaataaattttttctcaaggaattttcttgatcatcca
gaatatggatatggcatgttagacattataagagagaatattctggtggacagatgcatt
cttgatggtgaaatgttggtctgggacaaatctgcaaatcgatttgcagagtttggttca
aatcaagaaatagccaaggctgccaaggatgggcttgatagcgatcgacagttgtgctat
gttgcgtttgacatcctttatgttggagacaccagtgtcattcaccagagcttgaaggag
aggcatcaacttcttcagcaatatgttaaacctatagcaggttgtttcgagattttggtt
cctaatggtggccttaatacgcatcgtcctgctggggaaccgtgttggtctctaattgtt
catgatgttgatggcgttgagaagtttttcaaagaaactattgagaacagagatgaagga
atcgtcctgaaagatcttggctctaaatgggaacctagtgatcgtagtgcaaagtggatg
aagttgaagcctgattacattcgagcaggctctgatttagatactcttataataggaggt
tactatggttctggacgtcatggaggtgaggtagcacaatttctcgttggccttgcagag
cgtccaagcccaaacacatatccaaaacgatttctttcattttgcagagtgggtacagga
ctttctgatgaagagctcaatgctgttgtcaccaaattgaagccttatttcaggaaatat
gaatatccaaagaaactgccaccgagtttttatcaagttacaaataattcaaaggagaga
ccagatgtttggattgagagcccagaaaaatcagtcatagtttccataaccagtgatatt
cgaacaatcagatctgaggtatttgctgctccctatagcttgagatttccacggattgat
cgagtgagatatgacaagccttggcatgagtgccttgatgtccagtcttttgttgaatta
gtacattcaagcaacggtactatgcaaagggtaatggatgacacagtgattctggaaaat
aacccaagacgcaaggtgtctcgaggaacaaagaagaatgtctctgttgttccctcccac
tttattcaaactgatgtttctcgggttaagggtgaaacatcaatattttcagacatgata
ttttactttgttaacgtacctatattgcattctcttgattcattgcacaaaatggtggtt
gagaatggcggcaccttttcaatgaatctgaacagttcggtcactcactgtatcgcatct
gagagtaaaggaatcaagtttcaggctgcaaagcgccagggagatgttattcactactct
tggctccttgaatgttgtatgcagaagcagcttctccctttacagccaaagtactttctt
tttctatctgaggcaactaagaaaaagctggaagaagaagttgacgagttttcggactcc
tactatttggatttaaatgtgacagaactggaacagatattaaacaacattgacaagatt
gaagattctaaagcaaaagagtactgcaagaaattctgtcccagggaggagtgggttcgc
tttcatggttgtcgtgtttacttccacctacccaggcaatctttaaaataccgaaactgg
gaagttccatttgaacttgctattcgaaggatgaagattgaaatctgcattggtggtggc
agtatagcagacactctttctcatgctactcatttggtgattgtgtctattccagaactt
ggttacgactttgatacacttttgaatagtttttcggaagcacaaaggcatcttttgcac
cgtagaagtttgcaaattgtaaagtctcagtggttggatgattgttttgagaaagaccag
aagttgccagaggacatatatagtttgaagccccagcaatttcaacaaatatcaagtggg
gagagtgacgaacacaaacttgctggagaagaacatcatagctcatccagagatgcttca
tcttcttttggaggggcgagagaagagactgctgcaccacacaagccaagagtagccagg
aaaaggcgaaaaggtgaacccagtgggacgagtatcggaaaaagcaaaccactcgtcaat
ccctctcggaaaacaagaccacgggctggaaagaagcctgctaagatcagcgaatatgaa
tccgataatggcgcttcttcgggtgacaaggaagactttgaagccagcagcgctgattgt
gggagctccaggaaggtagacaatagaaggagagcagctctaactcaacctagaagagca
agggcccggcttagaaacaagcctgtcgagatcaacgaacatgaatcagatgaagaccac
gcagcaccagtaggagtagaggttgaaaacttcaaacctaaccagaggctttgcggcact
tcaagccagcagcccgttaccgatttgcgtcagaccgaggcactgaaagattctatacca
gacacgggcaaagcagtcgaacaaggggttacagaatcgagccattacaagcaaagtttt
gacgagtctggaatcggacagagcagcagcactcaacacaagaaccgaagtgaagacaaa
gttgatctggttcaagcaatgttactgaacatgttaccggctcttgcaatgaagaaggtc
gagagcgtggggccggttcgtgaagaggctgacacaagagctcctgatcctgtcaaggaa
gaagatcaactgggcaaggaagaagaaaagcaagcagttaagaaacggaaagtaagctac
aaagatgtggctagtcaacttctcaaggattggtga
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