Salvia miltiorrhiza (redroot sage): 131009772
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Entry
131009772 CDS
T09291
Name
(RefSeq) uncharacterized protein LOC131009772
KO
K15449
tRNA wybutosine-synthesizing protein 1 [EC:
4.1.3.44
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smil03016
]
131009772
Enzymes [BR:
smil01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.3 Oxo-acid-lyases
4.1.3.44 tRNA 4-demethylwyosine synthase (AdoMet-dependent)
131009772
Transfer RNA biogenesis [BR:
smil03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
131009772
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Methyltransf_29
Wyosine_form
Flavodoxin_1
Radical_SAM
Methyltransf_11
Methyltransf_25
Methyltransf_23
UCH_C
Motif
Other DBs
NCBI-GeneID:
131009772
NCBI-ProteinID:
XP_057793163
LinkDB
All DBs
Position
2:complement(56185346..56199336)
Genome browser
AA seq
1464 aa
AA seq
DB search
MAIGRFGPQVKRSNQSYGFFVKLSATVVLGLCFVIVWSVFSNYSVTSQRQTFDDIAEPVS
AASNGKVSNFGVHSEKIVPKKEKESGKQRFKSGLGDKDKKINNGSVPLKPEKKPENGGGG
NAKLSKKDGENKNQEDEGSEVEEEEEVITEKGDDEGNDGDEDANANDSVEEDANFINAEE
FDQESSEEDNGGSRKANRKTSGPVFDPKKRYTWKLCNTRSKHNYIPCIDIESATGRLQSY
RHHERSCPRSAVMCLVPLPRDGYGTPVRWPESKGKILYKNVEHPKLAAYIKTQDWLVESG
DYLTFPQNQSVFKGGVQHYLESIEEMVPDIELGKNIRIVLDMGCKDSSFMASLLEKDVLT
LTLGLKDDLVDLAQVALERGFPAVVSPLATRRLPFPSGVFDAIHCGECSISWHSNGATKL
ILEMNRILRPGGYFILSAKHSSIEAEEALSTLTASICWNILADKTDELSDIGMKIYQKPE
GNDIYELRRKKVPPLCKENENPDFAWYAPLKTCLHTVPEAIEQRGAEWPAEWPKRLHTFP
EWMNNREKLIADSEHWRSIVNKSYLVGMDIDWSTIRNIMDMKAISGGFAAAVSDQSVWVM
NVVPVHAPNTLPIIFERGLLGVYHDWCESFGSYPRSYDLLHADHLFSRLKNRCKQAIVIV
VEMDRLLRPGGWAIIRDKVEIINPLEEILRSLHWDIRMTFAQDREAILSAQKTTWRLHLS
WWESAAAAFSISSPFKWLFVDAADYANLPKARLLTFMWSLTIGTNGSANCAIQARPLTFP
RSLEHRQPIGRKTPQTIPKPQLEASAANAAFNSPNNLKLNTMSPSARLTLLTLLSATATL
YFLYKSRNRQRRLRRAVVGTHCHAPPKRGKLFFLSQTNTSKVLAQRLHALLTLNDIPFDL
VDPKDYEPEDLCKETLVLVVASTWDNGAPPHDGAFLVNWLAESADDFRVGALVLKDCRFA
VFGVGSGSYGETFNAVARDVAAKLRKLGGRELVELEEGDVDLGDLNGVFDRWSQKILEVL
NGNLEENEQGLENYVVESESEGDFSEEDDDEVEESDVVDLEDIAGKGPSRRSAVAAKANG
AVNGHTVNGEKEMVTPVIRANLEKQGYKVIGSHSGVKICRWTKSQLRGRGGCYKHSFYGI
ESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPLVIVDTAIDLHTKMIKQMKG
VPGVKAERLSEGLSPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPEKIMS
LKPITQLYVSVDAATKDSLKAIDRPLFGDFWERFLDSLKALKEKQQRTVYRLTLVKGWNT
EDIDAYSSLFDVGNPDFIEIKGVTYCGSSATSKLTMENVPWHYDVKEFSEAIARKSDGAY
EVACEHVHSCCVLLAKVDKFKVNGQWHTWIDYEKFHDLVSTGEPFTSNDYMAPTPSWAVY
GAEEGGFDPQHTRYRKERHHKSAR
NT seq
4395 nt
NT seq
+upstream
nt +downstream
nt
atggctataggaagatttgggccccaggtgaagcgctctaatcaatcatacgggttcttt
gtgaagctatctgcaactgtggtattgggcctctgctttgtgattgtatggtctgtgttt
tcaaattattctgtgacttcccaaaggcagacttttgatgacattgctgagccggtatct
gctgcatcaaatgggaaggtgagtaatttcggagttcactctgaaaaaatagtacccaaa
aaggaaaaagaaagtgggaagcagagatttaagtctggattgggtgataaagacaagaaa
atcaataatgggtccgtgcctttgaagccagaaaagaagccggaaaatggtggtggtggg
aatgcgaagctgtcgaaaaaggatggtgaaaacaagaatcaagaagatgaaggatctgag
gtggaggaggaagaggaggtgatcacagagaagggagatgatgaaggtaatgatggggat
gaggatgccaatgccaatgattctgtggaggaagatgctaatttcatcaatgcggaggag
tttgatcaggaatcttctgaggaggacaatggtggttcaaggaaggccaataggaagaca
tcgggtcctgtttttgatcctaaaaaacggtacacttggaagttatgcaacacgaggagc
aagcataactacattccctgtattgacattgaaagtgccacggggaggctgcaaagttat
aggcatcacgagaggagttgcccgagatcagctgtcatgtgtctcgtgcccctccctcgt
gatggttatgggactccggttaggtggcctgaaagcaaaggaaagatattgtataaaaat
gtggaacatccaaaattagctgcatatattaagacacaggattggttggtggaatctgga
gattatctcaccttcccacagaatcagtctgtattcaagggtggagttcagcattatcta
gaatcgatagaagagatggtgccagacattgaattggggaaaaacattcgcatagttcta
gatatgggatgtaaagattcgagctttatggcttctctacttgagaaggacgtcttgact
cttacgcttggcttgaaagatgacctagtggacctagcacaagttgctcttgagcgtggt
ttccctgctgtagttagccctcttgcaactcggagacttccatttcctagtggagtcttt
gatgcaattcattgtggcgaatgcagtatctcttggcattcaaatggtgcgaccaagctt
atcttggagatgaataggatattaaggcctggagggtatttcattttgtcagctaagcat
agcagtatcgaagccgaagaagctttgtccacattgacagcatcaatctgttggaacatc
ctggccgataaaaccgatgaactcagtgacataggcatgaaaatatatcaaaagccagaa
ggaaatgatatttatgaactgagacggaagaaagttccgcctctttgcaaggagaatgag
aacccagattttgcctggtatgctccgcttaaaacttgccttcacactgttcctgaagct
attgaacaacgtggagctgagtggcctgcggaatggccaaagcggcttcacacatttcct
gaatggatgaacaacagagagaagttaattgctgacagcgagcactggagatctattgtg
aacaagtcgtatctagttggaatggatatcgattggtcaaccatcagaaacataatggac
atgaaagccataagtggaggatttgcagctgcagtttcagaccagagtgtttgggttatg
aatgtggttcctgtacatgcacctaatacacttccgataatttttgagcgtgggcttctt
ggtgtgtatcatgattggtgtgaatcttttggttcttatcctcgatcttatgacctcctg
catgctgatcatctcttctcaaggcttaaaaacagatgcaagcaggccatagtaattgtt
gtggagatggaccggcttctacgaccgggtggttgggcaatcatccgcgacaaagtagaa
attataaaccctctggaagaaattctgagaagcctgcactgggacatccggatgactttt
gcacaagaccgggaggccatcctgagtgcccagaagaccacgtggcgccttcatttgagt
tggtgggaatctgcagctgctgcattcagtatatcctcaccatttaaatggctatttgtt
gatgctgctgactatgcaaacctaccaaaggcgcggctactgactttcatgtggtcgctg
acaattggtacaaatggcagtgccaattgtgccattcaagcacggccgttgactttcccg
cgatcgctggaacatcgacaaccaattgggcgcaaaaccccgcaaactattccaaaaccc
cagttggaagcatcagctgcaaatgccgctttcaattccccaaacaatttgaagttgaac
accatgtccccgtccgctcgcctcacccttcttactctcctctctgccaccgctaccctc
tacttcctctacaaatcccgcaatcgccaacgccgcctccgccgcgccgtcgttggaacc
cactgccacgctcctcccaaaagaggcaaactcttcttcttatcacagaccaacacttcc
aaagtcctcgcgcagcgcctccacgctctcttgaccctcaacgacatcccttttgatctt
gtcgaccccaaagactacgagcctgaggatttatgcaaagaaaccctcgttttggtcgtc
gcgtcgacgtgggacaacggcgccccccctcatgatggggctttcttggtgaattggctg
gccgagagtgctgatgattttcgggttggggcgctcgtgctcaaggactgcagatttgct
gtttttggggtggggagtgggagttacggggagacgtttaatgccgtggccagagatgtt
gcggcgaagttgcggaagcttgggggtagagagctggtggagttggaggagggagatgtg
gatttgggggatttgaatggggtgtttgatcggtggagtcagaagattcttgaggttttg
aatggtaatttagaagaaaatgagcagggtttggaaaattatgtagttgagagtgagagt
gaaggagattttagcgaggaggatgatgatgaggtggaagaatcggatgttgttgatctt
gaggatatcgctggaaaggggccttcaagaagatcagcagtggcagctaaggctaatggg
gcagtgaatggccatactgtgaatggggagaaagaaatggtgactccggtgatacgggca
aatttagagaagcaggggtataaagttattggctctcacagtggggttaaaatttgtaga
tggaccaagtcccagcttagagggcgtggaggatgttacaagcactctttttatggtatt
gagagtcacaggtgcatggaggctacccctagtttagcatgtgcaaacaaatgtgtcttt
tgttggagacatcacacaaatcccgtggggaagagttggcagtggaagatggatgatcca
ttggtaatcgttgacaccgcaattgatctacatacaaaaatgataaagcagatgaaagga
gttccaggtgtaaaggcagaacgtctatccgagggcctttctcctagacattgtgcctta
tcgcttgttggtgaacctatcatgtatccggagatcaacactcttgtcgatgagctacat
aggaggcgaatctcaacttttcttgtgacaaatgctcagtttcctgaaaaaattatgtca
ttaaaacctatcacgcagctctatgtgagtgtagatgctgcaactaaggatagcttgaag
gctattgatagaccgctcttcggggacttctgggagagatttctcgactctttgaaagca
ctgaaagagaagcaacagcgaactgtgtatcgcttgacattagtaaaaggatggaataca
gaagatatagatgcttattccagcctatttgatgttggaaatcctgattttattgaaatt
aaaggggtgacgtactgtggatcgtcagccacatcgaagctaacaatggaaaatgttccc
tggcattatgatgtaaaagagttttcagaagcgattgctcgaaagagtgatggggcatat
gaggttgcctgtgagcatgtccattcgtgttgtgttcttttggctaaagttgacaaattt
aaggtcaatggccagtggcatacatggatagactatgagaagttccatgacctggtatca
actggagaaccatttaccagtaacgattacatggctcctacaccatcctgggctgtctat
ggagcagaggaaggcggtttcgatccacagcatactcgctatagaaaagaacggcaccac
aaatctgcacgctga
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