Salegentibacter mishustinae: LDL76_06400
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Entry
LDL76_06400 CDS
T07820
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
smis
Salegentibacter mishustinae
Pathway
smis03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LDL76_06400 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smis03400
]
LDL76_06400 (mfd)
Enzymes [BR:
smis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LDL76_06400 (mfd)
DNA repair and recombination proteins [BR:
smis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LDL76_06400 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
SBP_bac_3
RecG_dom3_C
RimM
Motif
Other DBs
NCBI-ProteinID:
UBZ08339
LinkDB
All DBs
Position
1362890..1366273
Genome browser
AA seq
1127 aa
AA seq
DB search
MSKTIIAQSFAQSSQQQELRDSLVSSEKNRTKIQLKGLVGSAFSFVVANAFKEAEKPFLL
IFNDKEEAAYYLNDLEQLVGEKNVLFYPGSYRRPYQIEETDNANVLLRAEVLNRINSRKK
PAIIVTYPDALFEKVVTRKELDRSTLKISVEDELSIDFVNEVLFEYKFKRVDFVTEPGEF
SVRGGIIDVFSFSNDEPYRIEFFGDEVDSIRSFDVETQLSTDKVKKISVMPNVENKHLDE
IRDSFLKYISEKTVVFVKNLDLLTAQADKLFSKAEEAFNKLSEDVKHSEPKELFCDGHLI
KSQLELFSVVELSNQTYLEAQKSIEFQTKPQPSFNKQFDLLIDNLIENQENGYTNYIFCV
SEQQAKRFHDIFDDQERIVKYQTITLALFQGFIDETGKNVCYTDHQIFERYHKFHLKNGY
AKKQAITLKELGNLEVGDYVTHIDHGIGKFGGLQKIDVEGKKQEAIKLFYGERDILYVSI
HSLHKISKYNGKDGKEPKIFKLGSNAWKKLKQKTKARVKHIAYNLIELYAKRRLQKGFAF
GPDSYLQHELEASFMYEDTPDQSTATQAVKEDMENERPMDRLVCGDVGFGKTEVAIRAAF
KAVDNGKQVAVLVPTTILAFQHHETFTERLKDFPVTVDYLNRFRTAKERRETLADLENGK
VDIVIGTHQLVNKAVKFKDLGLLIVDEEQKFGVSVKDKLKTIKENVDTLTLTATPIPRTL
QFSLMAARDLSTITTPPPNRYPIETNVIRFSEETIRDAVSYEIQRGGQVFFIHNRIENIK
EVAGMIQRVVPDAKIGVGHGQMEGKKLEKLMLSFINGEFDVLVSTTIVESGLDVTNANTI
FINNANNFGVSDLHQMRGRVGRSNKKAFCYFITPPYSVMTEDARKRISALEQFSELGSGI
NIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKILNEAIEELKENEFQELYNESENIED
KTFVKDAQIDTDFEILFPDDYINNITERLNLYTQLNKITSEEELQKFEAELVDRFGELPT
QAVDLLNSVRIKWIAASIGLEKIILKQGKLIGYFISDQQSRFYQTNTFTKVLQYVQTHKH
KCTMKEKKTRNGLRLLLTFEKINSIESALKVLQPLDFRVKEEEVEAP
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaactattatcgcccaaagctttgcacaatcctcgcaacagcaggaattgagg
gattcccttgtctcttctgaaaaaaatcggactaaaattcaacttaaaggacttgttggt
tctgctttttcttttgttgtagccaatgcgtttaaagaagcagaaaaaccctttttgctg
atctttaacgataaggaagaagcggcttattatttaaacgatctcgagcagctggtagga
gaaaaaaatgtgcttttttatcccggcagttaccgccgtccatatcaaattgaggaaaca
gataatgcaaatgtattattacgagccgaagttttaaaccgaattaattcgcgtaaaaaa
ccagcgataattgttacctatcctgatgctttatttgaaaaagtagttacccgaaaagaa
ctggatagaagcacgctaaaaatttctgtagaagatgaactttctatagattttgtaaac
gaggttttattcgaatataaattcaaaagggttgattttgtaaccgaaccgggcgagttc
tcagtacgtggggggattatagatgttttttcctttagtaacgacgagccttaccgtatc
gagttttttggagatgaagtagacagcatcagaagttttgatgtagaaacccagctttct
acagataaggtgaagaaaatttcggtgatgccgaatgtggaaaataaacaccttgatgaa
atacgggatagttttctaaaatatatttcagaaaaaaccgtggtgtttgttaaaaacctc
gatttactcactgcgcaagccgataaactttttagcaaggcagaagaagcctttaataaa
ctttctgaagatgtaaaacatagtgaacccaaagagctgttttgtgatgggcatttaatt
aaaagtcagctagagcttttttcagttgttgaattgagtaaccagacttatttagaagct
cagaaaagtatagaatttcaaacaaaaccccagccttctttcaataagcaattcgattta
ctgattgataacttaattgaaaatcaggaaaacgggtatacaaattatatcttctgcgta
agtgaacagcaagccaaacggttccacgatatcttcgatgatcaggaacgtatagtaaaa
taccaaacaattactttggctttatttcagggttttatcgatgaaaccggaaaaaatgtt
tgttacacagatcaccagatctttgagcgctaccataagtttcatcttaagaatggttat
gctaaaaaacaggcgatcacgcttaaggaactcggtaatcttgaagtgggtgattatgta
acccatattgaccatggaataggaaaatttggcggacttcagaaaattgatgtagaaggt
aaaaagcaggaagcgatcaagcttttctacggtgagcgggatattttatatgtcagcatt
cactctctccataaaatttcgaaatataacgggaaggatggcaaagagcccaagatcttt
aaattgggaagtaacgcctggaagaaactaaagcaaaagaccaaggcgcgtgttaaacat
attgcctacaatttaattgaactttacgcaaaacgaagattacaaaaaggctttgccttt
ggcccagattcttacttacaacacgagctggaagcctcttttatgtatgaagacacgcca
gatcaaagtaccgcaacccaggcggtaaaagaagatatggaaaacgagcgccctatggat
cggttggtttgtggggatgttggtttcgggaaaacagaggttgctattcgggcagctttt
aaagcggtagataacggtaaacaagttgctgttctagtgccaaccactattttggcgttt
caacatcatgaaactttcactgaacgtttaaaagatttcccggtaacagtagattattta
aataggtttagaaccgctaaagaacgccgagaaactttagccgatctggaaaatggaaaa
gtagatattgtgattggtacgcaccaattggttaataaagcggtgaaatttaaagatctt
ggattactgatcgtagatgaagaacaaaaatttggagtttcggtaaaagataaactgaaa
actatcaaggaaaatgtagatacacttacattaacggcaacgcctattccaagaacgctt
cagtttagtttaatggccgcgcgagatttatctaccatcaccactccgcccccaaaccgt
tatccaattgaaactaacgtaattcgtttttccgaagaaactattcgggatgcggtttct
tatgaaattcaacggggcggacaggttttctttattcataaccggattgaaaatattaaa
gaagtcgccggaatgattcagcgtgtggtgccagatgctaagattggtgtaggccacggc
cagatggaaggcaagaagctggaaaaactgatgctgagttttatcaatggtgaatttgac
gttttggtttcaacaacgatcgtggaaagcggacttgatgttactaatgcgaacactatt
ttcattaataatgcgaataattttggggtttcagatcttcaccaaatgcgaggtagagta
ggacgaagcaacaagaaggctttttgttactttataacgccaccgtattctgtaatgact
gaagatgctcggaaacgaattagtgctttagagcaattttctgaattaggaagcggaatt
aatatcgcgatgaaagatttggaaattcgtggagccggagacttactgggtggcgaacaa
agcggatttatcaacgaaattggttttgatacctatcagaagattttaaatgaagcgatt
gaggaattaaaagaaaatgaatttcaggagctttataatgaatctgaaaatatagaggat
aaaacctttgtaaaagatgcgcagatcgataccgattttgagattcttttccccgatgat
tatatcaataatattactgaaagactgaatttatatacacagttaaataaaattacttca
gaagaagaattgcaaaagtttgaagcagagcttgtagatcgttttggggaattaccaacc
caggcggtagatttacttaatagtgttcgtataaagtggatcgcggcgagtataggtctg
gaaaagatcatattaaaacaaggcaaattgataggctattttatttccgatcagcaatcc
agattttatcaaaccaatacgtttaccaaggtgctgcaatatgtacaaacgcataagcat
aaatgcaccatgaaagagaagaaaaccaggaatggcttgcgattgctcttaacttttgaa
aagatcaattcgatagaaagcgctttaaaagttttgcagcccctggattttagggttaag
gaagaagaggttgaagccccctaa
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