Sphingobacterium mizutaii: 4412673_00578
Help
Entry
4412673_00578 CDS
T05395
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease recJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
smiz
Sphingobacterium mizutaii
Pathway
smiz03410
Base excision repair
smiz03430
Mismatch repair
smiz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smiz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
4412673_00578 (recJ)
03430 Mismatch repair
4412673_00578 (recJ)
03440 Homologous recombination
4412673_00578 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smiz03400
]
4412673_00578 (recJ)
DNA repair and recombination proteins [BR:
smiz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
4412673_00578 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
4412673_00578 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
4412673_00578 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
SNV41985
UniProt:
A0AAJ4X8X9
LinkDB
All DBs
Position
1:626954..628654
Genome browser
AA seq
566 aa
AA seq
DB search
MQKRWVLKPKKNVEQAKKLQQELGVNHIIAELLINREVETFDQAKDFFRPSLDHLHDPFL
MKDMDRAIDRIERAIGNKEKILIYGDYDVDGTTAVSVVYSFFRDFHTGLEFYIPDRYAEG
YGISNKGIDYAKENGFSLIIALDCGIKAVDKIEYANAKGIDFIIGDHHLPGDILPNAVAV
LDPKRVDCPYPYKELSGCGIGFKIIQAFIKQNKMSMDLAYQYLDLVAVSIASDIVPITGE
NRILTHFGLKKLNSNPCCGLQALINLSTHKSGHFTVNDIVFQIGPRINAAGRIDHAKDAV
KLLIAKTLPEARVFSASVDDQNKARKDFDLKITKEALDLLDNNVHLQTRNTTVLYKEDWH
KGVIGIVASRLTERYYRPTIILTNTNGHIAGSARSVLGFDLYEALSECSDLLDQYGGHKY
AAGLTMPTDNIGLFQQRFEEVVSKSIKPEMLQQEVSIEKEIRLSEIDPKFYRILSQFQPF
GPQNEAPTFLCRGVTMGNNANVVGSTHLKFSVKQEDSAIFECIGFGLGEFAELINSGKPF
DICFSIEENSWRGKKNLQLNVKAIRF
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaaaggtgggtgctgaaacctaaaaagaacgtagagcaggcgaagaagctacaa
caggagctgggtgtaaaccatataattgcagaacttttaataaaccgtgaggtcgaaacc
ttcgaccaagcgaaagactttttccgcccttctcttgaccatcttcacgatccttttctg
atgaaagacatggaccgagcaatcgaccggattgaacgtgccatcggcaataaagaaaag
attttgatctatggtgactacgatgtcgatggaaccactgccgtatctgttgtctacagt
tttttccgtgacttccatacgggattagagttctatattccagatcgctatgcggaaggc
tatgggatttccaataaggggatcgattatgcaaaggagaatggtttctccttgatcatt
gccttggactgtggtatcaaagcggtcgataaaattgaatatgcaaatgccaaaggaatc
gatttcatcatcggtgaccaccacctgccgggcgatatccttcctaatgccgttgcggta
ctggatcctaagcgtgtagactgtccttatccttacaaggaattatcaggctgtggcatc
ggattcaagatcattcaagcttttatcaagcaaaacaaaatgtcaatggatttggcatat
caatatctggatctggtggcggttagcattgcctcggatattgtacccattactggtgag
aacagaatattgacacactttggattgaaaaagctgaacagcaacccgtgttgtggtctt
caggctttgatcaatctttctacccataaatctggtcattttacggtaaatgatatcgtc
tttcagattggtccacgaatcaatgcggccggtaggatagaccatgcaaaagatgccgtg
aaattattgattgcaaagactttgcctgaagcgagagtgttctctgccagtgtagatgat
cagaataaagcccgtaaggactttgatctgaagattacgaaagaagcattggatttgttg
gataacaatgtgcatctgcagactagaaataccaccgttctctataaggaggattggcat
aaaggggtgatcgggatcgtcgcatctcgattgaccgaaagatattatagacctaccatt
atcctgaccaatactaatgggcatatcgcaggatctgccagatcggtactcggattcgac
ttatatgaagcattgagcgaatgtagcgacttgttggatcagtatggtggtcataaatat
gcagcagggttaaccatgcctacagataatattggtctttttcaacaacgttttgaagaa
gtcgtgagcaaaagcatcaaacctgagatgctgcagcaggaggtttctattgaaaaggaa
atcaggctttcagagattgatcctaagttttataggatcttgagtcaattccaacctttt
ggtccgcagaatgaagctccaacttttctttgcagaggcgtgacgatgggtaacaatgcc
aatgtcgttggcagtacgcatctaaagttttcagtaaaacaggaggattccgctatattt
gagtgtataggctttggtttaggcgaatttgccgagctgatcaattcggggaaacctttc
gatatatgcttcagtattgaggaaaactcttggcgtggcaagaagaatttgcaactaaat
gtaaaggcaattcgattttaa
DBGET
integrated database retrieval system
