Sphingobacterium mizutaii: 4412673_01541
Help
Entry
4412673_01541 CDS
T05395
Name
(GenBank) Putative DNA ligase-like protein Rv0938/MT0965
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
smiz
Sphingobacterium mizutaii
Pathway
smiz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
smiz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
4412673_01541
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smiz03400
]
4412673_01541
Enzymes [BR:
smiz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
4412673_01541
DNA repair and recombination proteins [BR:
smiz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
4412673_01541
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
SNV48378
LinkDB
All DBs
Position
1:1735701..1738163
Genome browser
AA seq
820 aa
AA seq
DB search
MSNLDQYNKKRDFSQTAEPKAVKGKINATQHHFVVQRHHASRLHYDFRLEIDGALKSWAV
PKGPSLNPKDKRLAVQVEDHPLSYGSFEGSIPEGNYGAGTVSIFDEGKYIPLEVKSDQEF
LKQWKNGNIKFKLEGKVLKGDFALVRMHTGVDKNWLLIKHKDEFSWDKPFDSEKLVSESI
KKEGKDFKKKSDKTETVKKKPLGLDDKSIKPMLAKLSQAIPDGNDWLFEKKFDGFRSLYF
SQNGTKKLISRNGNLLSNKFPSILKDLEGLTRDCILDGEIVIEDKNAIAQFQYLQSGEPI
PKNLNIYYYVFDILYLDNNDLTAYSLLERKEILNLLIKKHKFQHIKLSAEIKSPQKDLLD
YAREQKWEGIIAKRRDDPYGMGQRNGSWLKIKIRNTQEAIICGFTKPEGSRSHFGAIVLG
IKTAGQLKYIGNCGTGFNEELLKSLNKLFKPLVTDVKPFPKTEKIAKEKDVTWLRPELVC
DIYYSEWTRDEHLRHPVFKGIREDKSVNETTKEEPEKEDKIMDKELKFGKKTLKLTNLDK
LYWPTEKISKGDLLDYYEKMGDYILPYLKDKPISMNRFPNGIEAQSFFQKDVDPDKIPAW
LKTTEVFSESTSKTIDYLICNDLPSLLYIVNLGSIEINPWLSTYKNPEKPQYAVLDLDPN
GAEWNDTIDVALTAKEILDKGDIPAFIKTSGSSGLHIFMNVAAKYDYQVVRDFVQFIAEL
IHQVHPETTSLVRDPKKRKGLIYLDYLQNKEGQTIVAPYSVRPKPNATVSTPILWEELNY
DLSIQDFHIFNVYGRVTTIDDPWQELQSSKVDIKKALSKF
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaccttgatcaatataacaaaaaacgagatttttcccagaccgcggaacccaaa
gctgtaaagggaaaaattaatgccacgcaacatcattttgttgttcaaaggcatcatgcc
agtcgacttcattatgattttcgattggaaatcgatggtgcattaaagagctgggcagtt
cctaaaggcccatccctgaatcctaaagacaaaagattggctgttcaagtcgaagaccat
cccctcagttatggatcgtttgaaggcagcattcctgaaggtaattatggcgcaggcacc
gttagtatatttgatgaaggtaagtatatccctttggaagtaaaatccgaccaagaattc
ctaaagcaatggaagaacggtaatattaagttcaagttggaaggcaaggtcctaaaaggt
gattttgctctcgtcaggatgcatactggagtcgataagaattggctattgatcaaacat
aaggatgaattctcatgggataaacctttcgattctgaaaaattggtaagtgaatccatc
aaaaaggaaggtaaggactttaagaaaaaatcagataaaactgaaaccgtaaaaaaaaag
cccctagggctggacgataaaagtataaagcccatgcttgctaaattaagccaagctatt
cctgatggcaatgattggctttttgaaaagaaatttgatggcttccgttcactctatttt
tcccaaaacggcacgaagaaattgatatccagaaatggcaatctgctgagcaataaattt
cccagtatcctcaaagacttggaaggcttaacgagagattgtatcctcgatggcgagatc
gtaattgaagataaaaatgctattgctcaattccaatatctgcagtctggtgaacccatc
cctaaaaacctaaatatctattattatgtgttcgatattctttatctcgataataatgac
ctgacagcctattctttacttgaaagaaaggaaatcctgaatctactaattaaaaaacat
aaattccaacatataaaattgtccgctgaaatcaaatctcctcaaaaggatttattggat
tatgcgagggagcaaaaatgggaaggtattatcgcaaaaagaagagatgatccttacggg
atggggcagagaaacggaagctggctaaaaattaagatccgcaatacacaggaagccatt
atctgtggatttaccaaaccagaaggttcacgatctcattttggagccattgttctaggg
ataaaaacagcaggacaacttaaatatatcggtaattgtggaacgggttttaatgaggaa
ttattgaaatccttaaataaattgttcaaacccttagtgactgatgttaaaccatttcca
aagactgagaaaattgccaaggagaaagatgtcacttggttaagacctgaactggtctgt
gatatatattattcagaatggactagggacgaacatcttcggcaccccgtttttaaaggg
attcgtgaagataaatcggttaatgaaacaacgaaggaagaaccagaaaaggaagataag
attatggataaggaactgaaatttggaaaaaaaacactcaagttaaccaacctggataag
ctatattggccaacagaaaaaattagcaaaggcgaccttttggattattatgaaaagatg
ggcgattatatcttgccttacctgaaagataagcctatttccatgaatagatttccaaat
ggaattgaagcgcaaagcttctttcaaaaagatgtcgatccagataagattcctgcttgg
ctcaagactaccgaagtattttctgaaagtacctccaaaaccattgattatctcatatgc
aatgatttacctagtttactttatattgtcaaccttggttccatcgaaataaacccctgg
ctatcgacttataaaaatcccgaaaaacctcaatatgccgtgcttgacttggatcctaat
ggggcagaatggaatgataccattgatgtggcacttacagcaaaggagatcctggataaa
ggggatatccctgcatttattaaaacatccggatcgagtggtctacatatctttatgaat
gttgcagcaaaatatgattaccaagtagttcgtgattttgttcaatttattgcagagttg
atccatcaggttcatccagaaacgacgagtctggtccgagatccaaaaaaacgaaaagga
ttgatttatctcgattatctacagaacaaagaagggcagaccattgtggcgccttattcg
gtaagaccaaaaccgaatgccacggttagtacacccatcctttgggaagagctcaactat
gacctttcgattcaagatttccatattttcaatgtatatggccgagttactacgattgac
gatccatggcaggaacttcaatcgagtaaggtcgatatcaagaaagccctgtctaaattt
taa
DBGET
integrated database retrieval system
