Schistosoma mansoni: Smp_082790
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Entry
Smp_082790 CDS
T01095
Name
(RefSeq) putative tfiih, polypeptide
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
smm
Schistosoma mansoni
Pathway
smm03022
Basal transcription factors
smm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Smp_082790
09124 Replication and repair
03420 Nucleotide excision repair
Smp_082790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smm03021
]
Smp_082790
03400 DNA repair and recombination proteins [BR:
smm03400
]
Smp_082790
Transcription machinery [BR:
smm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Smp_082790
DNA repair and recombination proteins [BR:
smm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Smp_082790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
8343425
NCBI-ProteinID:
XP_018650127
LinkDB
All DBs
Position
2:16173106..16181304
Genome browser
AA seq
486 aa
AA seq
DB search
MGVHSCSSIFEYLKNVGVHMLDELYTHPPTCLVVFRELPELAKHFVMRLLFIEQPIPKSI
VSGWVEKGSSALLNDSCKALTDLRIWHSTDSNVSRGSWSLNKRYQESIRISLFGGGKPLL
GDLGVVTNDKYSKSVDFLKSYAAERWDAILHFMVGSESAEVGSVVKDVLLLSNLMKCEGN
DCPIGITKHGFHFLLMSRQFQVLVFILHYFDYLKENSKNLVGALQFVFQLSFLCPTKSYP
VEALSTAQQEVLQHMRELGLAYQRKRTAPRFYVTPLALDFAGGHTTFLESKSGGWGPQSG
VIPTGVSKSDPTDSNKMFSQISVSNSSDVGYILLETNFRLYAYTDSPLRTALLSLFSKIR
ARFPNLVVADITRDSVREALIRGITANQILSFLTANAHPDMLLQNPILPPTLTDQIRLWE
LERDRFLFQEGCLYEQFSRNTDFEMVRDYAKSIGVLLWENPERRLMVVSKAGHEDVRKFW
KHKRPS
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtccattcatgttcatctatatttgaatatctcaaaaatgttggtgttcatatg
cttgacgaattgtacactcatcctccaacatgtcttgttgtttttagagaattacctgaa
ctggcgaaacattttgtcatgcgacttttatttattgaacaaccgataccgaaatctatt
gtctctgggtgggttgaaaagggttctagtgcacttctaaatgactcatgtaaagctttg
accgatttaaggatatggcattctacagacagtaatgtttctcgaggctcttggtcttta
aataaaaggtaccaagaatctattcggatatcactattcggaggtggaaaacccttactt
ggagatttaggcgttgtgacaaacgataagtactcaaaaagcgttgactttttaaaatct
tatgcagctgaacgatgggatgctatacttcactttatggtaggttctgaatcagcggaa
gttggaagtgttgtgaaggatgtccttttattgtccaatttaatgaaatgtgaaggtaat
gattgtccaatcggtatcacaaagcacgggttccatttcttgcttatgagtcgacagttc
caggtgctagttttcatcttgcactactttgactacttgaaggaaaatagtaaaaattta
gttggagccctacagttcgtcttccaacttagttttttgtgtccgacaaagagctatcca
gtagaggcactgagtactgcccaacaggaagtattacaacatatgcgcgaactcggttta
gcttatcaacgaaaacgtacagcgcctcgtttctatgtaactcctcttgctttggatttc
gctggaggtcatactactttcttggaaagtaaatcaggtggatggggtccacaatcgggg
gttattcctactggtgtctcaaaatcagatcccaccgacagcaataaaatgttttcgcag
atttcagtatcgaattcttccgatgttggttacattttgctcgaaaccaattttcgacta
tacgcctatacagattcaccgcttcgtactgctcttcttagcttatttagcaaaatacgt
gcacgttttcctaatcttgttgttgctgatataacccgtgactcagttcgggaagcatta
attcgtggaataactgcaaatcagatcctatctttcttaacagccaatgcacatccagat
atgttactacagaatcctatattaccgcctactttaaccgatcaaatacgactatgggaa
ttagagcgagatagatttctatttcaagaaggctgtctgtatgaacaattctctcggaat
acagattttgaaatggttcgggattatgctaaaagtattggtgttttactctgggaaaat
cctgaacgaagacttatggttgtgtctaaagcaggtcatgaagatgtacggaaattttgg
aaacacaaacgtccgtcctaa
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