Selaginella moellendorffii: SELMODRAFT_165728
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Entry
SELMODRAFT_165728 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
smo
Selaginella moellendorffii
Pathway
smo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SELMODRAFT_165728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_165728
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SELMODRAFT_165728
mRNA degradation factors
5'-3' decay
Decapping complex
SELMODRAFT_165728
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
9643329
NCBI-ProteinID:
XP_002962712
JGI:
165728
UniProt:
D8QW64
LinkDB
All DBs
Position
Unknown
AA seq
474 aa
AA seq
DB search
MSMSQKSDLAGLGDFRDPRGRQQTPRGSPDSSYGSRKSLDSSPQMRSKYMTTDEIDTIVR
IQWAATHGSDPYIDDYYHQAMQSKQAGGTPHGRRHFAPSHLRELPSHARTAAEPHAFLQV
DALGRIPFSSIRRPRPLLDVDGVNSTGDRLLSSDSASSQRRLEQEPMLAARIAVEDGLCL
LLDVDDIDRMLAVSQHPDGGGQLRRRRQMLLEGLAASLQLVDPLAPGSAMRDSSGRFGLA
AKDDLVFLRLVSLPKGRKLLTRYLRLLVPGSELVRIVLMAVFRHLRFLFGGVQSDPSAAA
SSTGLANAVAATIKTMDLPSLSACLAAVVLASEPPPLRPVGSPSGDGATVALQAVLDRAT
SILTDRNVQYPLQNTSVWQASFDAFFGLLSKYCTNKYESIMHSLLMASAGSSAAINAAAA
AAMTREMPIELLRSSLPHTNENQRKRLLELAQRSLVMGVGVGDGHVSAAAAVRG
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgagcatgtcccaaaagtcggacttagcaggcttgggggatttcagagatcccagggga
aggcagcagactcctcggggctctccagatagctcgtatggttccaggaaaagcttggac
tcttcacctcagatgcgatccaagtatatgacgacggacgagatcgacaccattgtgagg
attcaatgggctgcaacgcacggaagtgatccatacattgacgactactaccaccaggca
atgcagtcgaaacaggcgggtggtacgccgcacggaagacggcatttcgctccttctcat
ttgcgggagctcccgtcccacgcacgaacagcagcagagccgcatgcctttctccaggtt
gacgcgctagggaggattcctttctcgtcgattcgcaggccacgaccattgctcgacgta
gacggcgtcaacagcacgggtgacagactattgtcatccgacagtgcttcaagtcagaga
cgcttggagcaggagccgatgttagccgcaaggattgctgtggaggacgggctgtgcctg
ctcttggacgtcgacgacatcgaccgcatgctggccgtctctcagcatcccgacggtggt
ggccagttgcggcgacgcagacaaatgctgctggaaggactggcagcctcgcttcagctg
gtcgatcctttggctccaggcagtgcgatgagagactcgagcggacggtttggactggct
gccaaggatgatctggtgttcctgcggttggtctcgctccccaaaggcaggaagctcctc
accagatatctacgactgctcgtcccgggaagcgagctcgttcgcatcgtcctcatggca
gttttccggcatttgaggttcttattcggcggcgtccagtccgatccaagcgctgcggct
tcgtccactggtctcgcgaatgcagtcgccgccaccatcaaaaccatggacttgccatct
ctcagcgcctgcctcgcagcggtggtcttggcatcggagccgccacctttgagaccggta
ggaagcccgtccggcgatggagccacggtggctctccaggcagtgctggaccgagctacg
agcatcctgacggacaggaacgtccagtacccgctccagaacacgagcgtgtggcaggct
tcgttcgacgccttcttcggcctgctgtccaagtactgcaccaacaagtacgagagtata
atgcactcgctgctcatggcgtcggccgggagctcggcggccatcaacgcggcggcggcg
gcggccatgactcgcgagatgccgatcgagctgctgcgctccagtctgccgcacaccaac
gagaaccagcgcaagaggctgctggagctcgcgcagaggtcgctggtgatgggagtgggc
gttggcgatgggcatgtcagtgccgccgcggcggtgagaggctga
DBGET
integrated database retrieval system
