Selaginella moellendorffii: SELMODRAFT_171333
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Entry
SELMODRAFT_171333 CDS
T01496
Symbol
COP1-1
Name
(RefSeq) hypothetical protein
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
smo
Selaginella moellendorffii
Pathway
smo04120
Ubiquitin mediated proteolysis
smo04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
SELMODRAFT_171333 (COP1-1)
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
SELMODRAFT_171333 (COP1-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smo04121
]
SELMODRAFT_171333 (COP1-1)
Enzymes [BR:
smo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
SELMODRAFT_171333 (COP1-1)
Ubiquitin system [BR:
smo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
SELMODRAFT_171333 (COP1-1)
Multi subunit Ring-finger type E3
Cul4 complex
Target recognizing subunit (DCAF)
SELMODRAFT_171333 (COP1-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_3
WD40_like
zf-RING_2
zf-RING_UBOX
eIF2A
zf-RING_5
U-box
TAF1C_beta-prop
zf-C3HC4_4
zf-rbx1
zf-Nse
Tantalus
DUF4349
Motif
Other DBs
NCBI-GeneID:
9646461
NCBI-ProteinID:
XP_002970454
JGI:
171333
UniProt:
D8RGE3
LinkDB
All DBs
Position
Unknown
AA seq
646 aa
AA seq
DB search
MSFSSEQQQQQQQQQGPRLLADKDFQCPICIQTMKDAFLTACGHSFCYMCIITHLNNKKN
CPCCGVYLTSSQLYPNFLLNKILKKVATSQISCASPTEQLRFALQQGVDVPLKEIDSLLV
LLSDKKRKAEHEEAEVNMEVLLEFLQRSRQQKMEELSEIQGDLQSLREDISAVEIQRQEL
LKSRQTSSLKWRFLLDCPALDCAAQENPYNRPAVPLHRVGQAGAALLGGEQRKATRGPLV
KKNGGISNGTSDFEPLPCKTAKKKRMLNQFEDLQDCYLNKRRRDRQMKKLEAIVKKEKDE
EGCGGFNQPSGLEDFRSILAGFTRYSRLELVAELRHGDLFHSSNIVSSIEFDRDDELFAT
AGVSRRIKIFEFATVVNELADVHCPVAEMSTRSKLSCLSWNKYIKGQIASSDYEGTVTVW
DVNSCQSVMEYEEHERRAWSVDFSRTDPTMLVSGSDDGKVKLWCTRQETSVLNIDMKANI
CCVKYNPGSSNFVAVGSADHHIHYYDLRNSKSPLHVFSGHRKAVSYVKFVSPNELASAST
DSTLRLWDVQKSSQIRSLTGHANEKNFVGLTVNSEYIACGSETNEVVVYHKEVPKPAARH
RFTNHDSEESDDDVFHFISAVCWKSDSPTMLAANSQGTIKVLVLAP
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgagtttctcgtccgagcagcaacagcagcaacagcagcagcaagggccgcggctgttg
gcggataaggatttccagtgcccgatttgcatccagacgatgaaggatgcgtttctcacg
gcttgcggccacagcttttgctacatgtgtatcatcacgcacctcaacaacaagaagaac
tgcccgtgctgtggagtctacctcactagcagtcagctttaccccaattttctattgaac
aaaatacttaagaaggttgctacgtcgcaaatctcgtgtgcgtccccgacagagcagctt
cgttttgctctacaacagggggtcgacgttccactcaaagagatcgattcattgctggtt
ttgttgagcgataagaagcgaaaagccgagcacgaggaagccgaggtgaacatggaggtt
cttctcgagtttttgcagagatctaggcagcaaaagatggaagaactttctgagattcaa
ggggacttgcagtcgctgagggaggacatctctgctgttgagatccagaggcaggagctg
ctcaaatcgagacaaacaagctcgctgaagtggcgctttcttcttgactgcccggctctc
gactgtgcggctcaagagaacccgtacaaccgtcctgcggttcccttgcatcgtgtcggc
caagcaggggcagccttgctcggtggagaacaaaggaaagcaacgagaggtcctctcgtg
aagaagaatggtggcatttcaaatggtacctctgactttgaaccgctgccttgtaagacc
gcaaagaaaaagaggatgctaaaccagtttgaagacttgcaagattgttacttgaataag
agacgacgtgatcgtcagatgaaaaagcttgaagccattgttaaaaaggagaaagacgaa
gaaggctgtggtgggtttaatcaaccttcaggccttgaggactttagatctattctcgct
ggcttcaccagatatagtcgtttggagctggtggctgagctacgacacggagacttattt
cattcttctaacattgtttcaagtattgaatttgacagggacgacgaactctttgccact
gcaggagtttcgcggcgaatcaaaattttcgaatttgcaacggttgtcaacgagcttgca
gacgtccattgtcctgttgccgagatgtctacgcggtcaaagctaagctgcctaagttgg
aacaagtacatcaagggacaaatcgcgagcagcgattatgaaggcactgtaactgtttgg
gatgtaaattcttgccagagtgtcatggagtacgaagagcacgagagaagagcctggagc
gtcgatttctccaggacggacccgacaatgctagtgtctgggagtgacgacggaaaggtc
aagctgtggtgcaccaggcaggagacaagtgtcctgaacattgacatgaaggcaaacatt
tgctgtgtcaaatacaatcccggatctagcaattttgtcgcggtgggctcggccgatcat
catatccactattacgatctccggaactccaagtcgcctctacatgtctttagtggtcac
cgaaaagccgtctcgtatgtaaagtttgtatcccccaacgagttggcctcggcttccact
gacagtacactgcgattgtgggacgtccagaagagctcccagatacgcagcctcacaggc
catgctaacgagaagaactttgtaggcttgacagttaacagcgagtacattgcgtgcggt
agtgaaacgaacgaagtcgtggtgtatcacaaggaagttcccaagccagcagcaaggcac
agattcacaaaccatgactcggaggagagcgacgacgatgtgttccacttcatcagtgct
gtgtgctggaagagcgatagcccaacgatgcttgcggcaaacagccaagggacgatcaag
gttctggtgcttgctccgtga
DBGET
integrated database retrieval system