Selaginella moellendorffii: SELMODRAFT_96989
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Entry
SELMODRAFT_96989 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K12878
THO complex subunit 1
Organism
smo
Selaginella moellendorffii
Pathway
smo03013
Nucleocytoplasmic transport
smo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SELMODRAFT_96989
09122 Translation
03013 Nucleocytoplasmic transport
SELMODRAFT_96989
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_96989
03041 Spliceosome [BR:
smo03041
]
SELMODRAFT_96989
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
SELMODRAFT_96989
Spliceosome [BR:
smo03041
]
Complex C
Other components
EJC/TREX
SELMODRAFT_96989
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
SELMODRAFT_96989
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
DUF3933
Motif
Other DBs
NCBI-GeneID:
9651326
NCBI-ProteinID:
XP_002972508
JGI:
96989
UniProt:
D8RMU7
LinkDB
All DBs
Position
Unknown
AA seq
583 aa
AA seq
DB search
MVDAGGGLRVQLQHVADPVFSALQSDRNRILVSSSRSQLRPIGGKYFQDVFKQAISHSSP
AAAVALATMQEAMKPQKHAVLVQDENQLLENALRLLLQELVGAAVDAGEPVMQYGRSIDD
SDNSGGLITRLLDIVLYLCEKSHVEGGMVFQLLEDLTEVSTIKDCKEVFAYIEGKQEVLG
KTELFGRGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHVFPLYERSAVNIKGVFNTS
NETNYEKDQPDDVPIDFNFYKTFWGLQEHFSNPAALIPRWHIFSASLTIVLSAFDAQPLG
DDDSTSHQLDEGDDMTFNTKYLTSSNLMSLELKDPSFRRHVLVQCLIVFDYLKTPGKTEK
EAARESLKDEVKVLEDRVKRLLESTPPKGKDFLKSIEHLLEREKNWVWWKRDGCPPFEKN
VSERKSSIEGTKKRKQRWRLGNKELSQLWKWADQNPNALTDPQRVKTPPVHEYWTALAED
MDPMSGIEAEYSHKNDKVYCWKGLRFSARQDLEGFARFTELGIEGVVPPELLTQEVRLKV
HGKSDKSKQKAAKKGDDAATVPPSEENQVLSTLQFKRMEATFF
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggtggacgcgggcgggggattacgagtccagctccagcacgtcgcggatccagtcttc
tcggctctccaatccgatcgcaacaggattctggtgagttcttcgcgatctcagctcagg
ccaatcggtgggaaatatttccaggatgttttcaagcaagcgatctcgcactcgtcgcct
gctgcggcggtggcgctagccacgatgcaggaggcgatgaagccccagaagcacgccgtg
ttggtccaggacgagaatcagctcctggaaaacgcattgcgcttgctgctccaagaactt
gtgggcgctgctgtggatgccggggagccagtaatgcagtatgggcgttctatagacgac
tcggacaacagcggtggattgatcaccaggctccttgatatcgtcttgtatctctgcgag
aagagccatgttgagggaggcatggttttccagctgttagaggacttaacagaagtatcg
actatcaaagattgtaaggaagtttttgcctacatcgaggggaaacaggaagttcttgga
aagacagaattgtttgggcgggggaaactggtcatgttgagaacttgcaatcagttgcta
agacgactttcaaaggcgaacgatgttgtattttgcggccgaatccttatgtttcttgca
cacgtttttcctctctatgaacgatcagctgtaaatattaagggtgtattcaatacctct
aacgaaacaaactatgagaaagaccaacctgacgatgtgcctattgatttcaacttttac
aagactttttggggacttcaggaacacttctctaaccccgcagcactgatcccaagatgg
catatcttctctgcaagtttaactattgttttgagcgcctttgatgcgcagcctttggga
gatgatgatagcacttcccaccagcttgatgagggcgatgacatgacctttaatacaaag
tatcttaccagtagtaatttgatgtctctcgagcttaaagatcccagttttaggagacat
gtacttgtacagtgcctgattgtttttgactatttgaagacacccggtaaaacggaaaaa
gaagcagcaagagaaagtctgaaagatgaagtaaaggttttggaagatcgcgtgaagcgt
cttttagaatctactcctcctaaaggaaaagatttcttgaagagcattgagcatttactt
gaacgtgaaaaaaactgggtctggtggaaacgcgatggttgcccaccatttgaaaaaaac
gtttctgaacgcaaatcgtctattgaagggactaaaaagaggaagcagcgatggaggttg
ggaaacaaggaactctcacagctgtggaaatgggcggatcaaaatcctaatgctctgact
gatccacagcgagtgaagacgcctccagttcacgagtattggactgctttggctgaggat
atggatcctatgtctggtattgaagcggaatacagtcacaaaaacgataaggtctactgt
tggaaaggcttaagattctcagcaaggcaggatttggaaggatttgcaaggttcactgag
ctaggaatcgaaggtgttgtgccgcctgagctacttacccaggaagttcggcttaaagtt
catgggaagtcggacaagtcaaagcaaaaggcagcaaagaaaggggacgacgccgcaaca
gttcctccttcggaagaaaatcaggttctttcgacacttcagtttaaacgaatggaagcg
acctttttttaa
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integrated database retrieval system
