KEGG   Streptomyces mobaraensis: J7W19_03950
Entry
J7W19_03950       CDS       T07674                                 
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
smob  Streptomyces mobaraensis
Pathway
smob03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:smob00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    J7W19_03950 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:smob03400]
    J7W19_03950 (ligD)
Enzymes [BR:smob01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     J7W19_03950 (ligD)
DNA repair and recombination proteins [BR:smob03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     J7W19_03950 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LysR_substrate
Other DBs
NCBI-ProteinID: QTT72701
LinkDB
Position
complement(1051771..1052676)
AA seq 301 aa
MPAAPGRQTVEIEGHRLSLSHLERVLFPATGQTKAHVLHYYARIAPAMLPHITGRPASFV
RAPEGAAGESWIAKNPPPGAPDWVPRATVRHREGTSRQVVIDSVAALVAMVNLGAYEVHV
PQWTAAAGRDAHDRVVLDLDPGPGTDLVVCCRVAERLRQLLDEDGLTAFPVVSGSKGLHL
YAPIHPAPGRSVSAYAKGLATRLMNEHPGLVVVSMAKLERRGKVLIDWSQNASAKTTAAP
YTVRVRGEREGVAAPVTWDEVGSCREPGDLGFGLEDVVGRVGELGDLLGPVAGDAVRGSL
P
NT seq 906 nt   +upstreamnt  +downstreamnt
gtgcccgccgcacccggccgccagacggtggagatcgaggggcaccggctctccctctcc
cacctcgaacgggtcctcttccccgccaccggccagaccaaggcccacgtcctgcactac
tacgcgcggatcgcccccgcgatgctgccgcacatcaccggccgcccggcgtccttcgtc
cgggccccggagggcgcggcgggggagagctggatcgccaagaacccgccgcccggcgca
ccggactgggtgccgcgggccacggtccggcaccgggagggcaccagccggcaggtggtg
atcgactcggtcgccgcgctggtcgccatggtcaacctcggcgcgtacgaggtgcacgtg
ccgcagtggacggccgcggccggccgtgacgcccacgaccgcgtcgtcctcgacctggac
cccggccccggcaccgacctcgtcgtctgctgccgcgtcgccgaacggctgcgccagctc
ctcgacgaggacggcctcaccgccttcccggtcgtctccggctccaaggggctccacttg
tacgcccccatccacccggcccccgggcgttccgtcagcgcctacgcgaaggggctcgcc
acccggctgatgaacgagcatcccggactggtcgtcgtctccatggcgaagctggaacgg
cgcgggaaggtgctcatcgactggtcccagaacgcgagcgccaagacgacggcggcgccg
tacacggtgcgggtgcggggcgagcgggagggggtggcggcgccggtgacgtgggacgag
gtgggctcctgtcgggagcctggggatttggggttcgggctggaggatgtggtggggcgg
gtgggggagttgggggatttgctggggccggtggcgggggatgcggtgcgggggtcgttg
ccgtga

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