Streptomyces mobaraensis: J7W19_12735
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Entry
J7W19_12735 CDS
T07674
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
smob
Streptomyces mobaraensis
Pathway
smob03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J7W19_12735 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smob03400
]
J7W19_12735 (mfd)
Enzymes [BR:
smob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J7W19_12735 (mfd)
DNA repair and recombination proteins [BR:
smob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J7W19_12735 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
QTT74163
LinkDB
All DBs
Position
complement(3038040..3041567)
Genome browser
AA seq
1175 aa
AA seq
DB search
MSLHGLLDAVVNDPALAEAVKAAGDGNRPHIDLVGPPAARPFTIAALARAGRPVLAVTAT
GREAEDLAAALRSLLPPDGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPSPDDPA
AGPVSVVVAPIRSVLQPQVKGLGDLEPVSLRSGRSADLGEVTEALAAAAYARVELVEKRG
EFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELLL
TDAVRERAAALAEDHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPAGSMAVV
CDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVDAASLWSIADVRDHARELGMMW
WSVSPFAADEDLDSDTLTLGMNAPEAYRGDTARALADTKGWLADGWRTLFLTEGHGPAAR
TVEVLGNEGIPARLDAALDDFSPALVHVSCASLDSGFVHPGLKIAVLTETDLSGQKSASK
DMGRMPARRRKSIDPLTLQAGDYIVHEQHGVGRYIEMVQRTVQGATREYLLVEYAPAKRG
QPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSAR
MAAPGHSFGPDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGDVGYGKT
EIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYAQFPVVVKALSRFQTDTEAKAV
LEGLREGSVDVVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTMS
ATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYDPKQIGAAIRRELLREGQVFYI
HNRVESIDRAAARLREIVPEARIATAHGQMSESALEQVVVDFWEKKFDVLVSTTIVESGI
DISNANTLIVERGDNFGLSQLHQLRGRVGRSRERGYAYFLYPPEKPLTETAHERLATIAQ
HTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYIRMVGEAVADYRASLEAGGA
EEPPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANSEEDIKAVREELTDRYGKLP
EPVENLLLVAGLRMLARACGVTDITLQGSNVRFGPVELRESQELRLKRLYPRTVMKPANR
QILVPRPATRPIGGKPLVGRELLAWTGEFLTTILG
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtcgtcaacgatccggcgctcgccgaagcggtg
aaggccgcgggcgacggcaaccggccgcacatcgacctcgtcggaccgcccgccgccagg
ccgttcaccatcgccgccctggcccgcgcgggccggcccgtgctggccgtcaccgccacc
gggcgggaggccgaggacctggccgccgccctgcgctcgctgctgccgccggacggcgtc
gtcgagtacccgtcctgggagacgctgccgcacgagcgcctttcgccgcgctccgacacc
gtcggccgccggctcgccgtgctccgccggctcgcccaccccagccccgacgacccggcc
gccgggcccgtcagcgtcgtcgtcgcgcccatccggtcggtgctccagccgcaggtcaag
gggctcggcgacctggagcccgtcagcctgcgcagcgggcggagcgccgacctcggcgag
gtgaccgaggcactggccgccgccgcgtacgcccgggtcgagctggtcgagaagcgcggc
gagttcgccgtccgcggcggcatcctcgacgtcttcccgcccaccgaggaacacccgctg
cgggtggagttctggggcgacgacgtggaggagatccgctacttcaaggtggccgaccag
cggtccctggaggtggccgagcacggcctctgggcgccgccctgccgcgaactgctgctc
accgacgccgtccgggagcgggccgccgcgctcgccgaggaccacccggagctgggcgaa
ctcctcgggaagatcgccgagggcatcgccgtcgagggcatggagtccctcgccccggtg
ctggtggacgacatggagctgctgctcgacgtcctcccggccggcagcatggcggtcgtc
tgcgacccggagcgggtgcggacccgtgccgcggacctcgtcgccacctcgcaggagttc
ctccaggcgtcctgggccgccaccgcgggcggcggcgaggcgcccatcgacgtggacgcc
gcctcgctgtggagcatcgccgacgtccgcgaccacgcccgcgaactgggcatgatgtgg
tggtccgtcagccccttcgccgctgacgaggacctggacagcgacaccctcaccttgggc
atgaacgcccccgaggcctaccgcggcgacaccgcccgcgccctggccgacaccaagggc
tggctggccgacggctggcggacgctgttcctcactgaggggcacggcccggccgcgcgg
acggtggaggtgctgggcaacgagggcatcccggcccggctcgacgccgcgctcgacgac
ttctccccggccctggtgcatgtctcctgcgcgagcctggacagcggtttcgtccacccg
ggactgaagatcgccgtcctcaccgagaccgacctctccggccagaagtccgcgagcaag
gacatgggccggatgccggcccgccgccgcaagtccatcgacccgctgaccctccaggcg
ggcgactacatcgtccacgagcagcacggcgtcggccgctacatcgagatggtgcagcgc
accgtccagggcgccacccgcgagtacctgctcgtcgagtacgcccccgccaagcgcggc
cagcccggcgaccgcctctacatccccaccgaccagctggaacaggtcaccaagtacgtg
ggcggcgaggcgccgacgctgcaccggctcggcggcgccgactggaccaagaccaaggcg
cgcgccaagaaggccgtcaaggagatcgcggccgatctgatcaagctctactcggcgcgg
atggccgcccccggccactccttcggcccggacaccccctggcagcgggagctggaggac
gccttcccctatgccgagaccccggaccagctcaccaccatcgccgaggtcaaggaggac
atggagaagtccgtccccatggaccgcctgatctgcggcgacgtcggctacggcaagacg
gagatcgcggtgcgggccgccttcaaggcggtacaggacggcaagcaggtggcggtgctg
gtgccgaccacgctgctggtgcagcagcacttcggcaccttctcggagcggtacgcccag
ttccccgtggtggtgaaggcactctcccggttccagacggacaccgaggccaaggcggtg
ctggagggcctgcgcgagggctcggtcgacgtcgtcatcggcacccaccgcctcttctcg
tccgagaccaagttcaaggacctgggcctggtcatcgtcgacgaggagcagcgcttcggc
gtcgagcacaaggaacagctgaagaagctgcgcgccaacgtggacgtcctcaccatgtcc
gcgacgccgatcccgcgcacgctggagatggccgtcaccggcatccgcgagatgtccacg
atcaccactccgccggaggagcgccatccggtcctcaccttcgtcgggccctacgacccg
aagcagatcggcgccgccatccggcgcgaactgctccgcgaggggcaggtcttctacatc
cacaaccgtgtcgagtccatcgaccgggccgccgcccggctgcgcgagatcgtgcccgag
gcgcggatcgccaccgcgcacgggcagatgtcggagtccgcgctggagcaggtcgtggtc
gacttctgggagaagaagttcgacgtgctggtctccacgacgatcgtggagtccggtatc
gacatctccaacgccaacaccctcatcgtcgagcgcggcgacaacttcggtctctcccag
ctccaccagctccgcggccgcgtcggccgcagccgcgagcgcgggtacgcctacttcctg
tacccgccggagaagccgctcaccgagaccgcccacgagcggctggccaccatcgcccag
cacaccgagatgggcgccggcatgtacgtggcgatgaaggacctggagatccgcggcgcc
ggcaacctgctgggcggcgagcagtccgggcacatcgccggcgtcggcttcgacctctac
atccgcatggtgggcgaggcggtggcggactaccgcgcctccttggaggccggtggcgcg
gaggagccgccgccgctcgaggtcaagatcgaactgccggtggacgcgcacgttccgcac
gactacgcgccgggcgagcggctgcgcctccaggcgtaccgcgccatcgcctccgccaac
agcgaggaggacatcaaggccgtccgcgaggagctgaccgaccgctacggcaagctcccc
gagccggtggagaacctgctgctggtcgcgggcctgcgcatgctcgcccgggcctgcggg
gtcacggacatcaccctgcagggatccaatgtccgtttcggcccggtcgagttgcgcgag
tcgcaggagctgcggctcaagcggctctacccgcgcacggtcatgaagcccgccaaccgg
cagatcctcgtgccccggcccgccacccgccccatcggcggcaagccactggtcggacgg
gaactgctggcctggaccggggagttcctcacgaccatcctcggctga
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