Sphingomonas morindae: LHA26_01440
Help
Entry
LHA26_01440 CDS
T08557
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
smor
Sphingomonas morindae
Pathway
smor03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
smor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LHA26_01440 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smor03400
]
LHA26_01440 (ligD)
Enzymes [BR:
smor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LHA26_01440 (ligD)
DNA repair and recombination proteins [BR:
smor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LHA26_01440 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
USI73175
LinkDB
All DBs
Position
1:301954..304461
Genome browser
AA seq
835 aa
AA seq
DB search
MAKADPLASYNAKRDFGRTREPRGEAAAGGGHQFLVQKHDATRLHWDFRLEMDGVLKSWA
VTRGPSPDPADKRLAVRTEDHPLAYATFEGSIPKGEYGGGTVMLWDRGRWEPVGGKDPAK
TLEQGHVHVRLHGERMQGEWLLVRLKPRPGEKRENWLLRKVQDEAAQSGDMLVETGLTSV
ATGRTMAEIARDADAVWQNGAETHGARPERKARSPAAKAARTPKRRAAAARAHPPAFRPV
QLATLVDAVPSGSGWIHEVKFDGYRALLAIGGGAARAYTRHGLDWSDRFAPIVAAARGLA
PGGALIDGEVVALDRNGRPSFSALQAALTEGGPLHYFAFDLLEEGGEDLTSLSTLDRKAR
LSHLLEGVSPPIHYTEHVESGGEALFRQLCADGYEGIVAKAAHAPYRGARSRAWLKVKCI
QRQEFILIGYTESDKAGRDLRSLLVGVRESDALRYAGRVGTGFTAATRADLIQRLAPLRR
ATPAAPVPRAAARGVIWVEPALVAEIAFAEFTAEAVVRHASFIGLREDKRAEEVVAERPA
AAPGGANGRFGVEISHPERVIFAGSGTTKGALAAYYAALAEPMLRWVGNRPVSLVRCPQG
RAKHCFFQKHDAGSFGDAVGHVAIREKKGGEEQYLVIPDGRGLLTCVQMGTIEFHGWGAP
ADDVEHPDRLVFDLDPDEGLGFSEVASAAHQLHDLLGEMGLRSFPLVSGGKGVHVVVPLD
RGRDWPAVKDFASRFARAVAEAHPRRFTANMRKIERRGRIFVDWLRNERGATAVLPYSAR
SRDRATVAAPVSWRELATLPDAQPFTVEDAETLLARAAGAELRGWGEADQTLPDL
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggccaaggccgatccgctcgcctcctacaatgcgaagcgggatttcggccgcacccgc
gagccgcgcggtgaagccgccgcgggcggcggccatcagttcctcgtccagaaacacgat
gccacgcgccttcactgggatttccggctggagatggatggcgtgctgaagagctgggcg
gtgacgcgcggccccagccccgatcccgccgacaaaaggctggcggtccgcaccgaggat
catccgctcgcctatgccacgttcgagggcagcatccccaagggcgaatatggcggcggc
accgtcatgctctgggatcgcggccgctgggagccggtgggcggcaaggatccggccaag
acgctcgaacagggccatgtccatgtccggctgcatggcgagcgcatgcagggcgaatgg
ctgctcgtgcggctcaagccgcgcccgggcgaaaagcgcgagaattggctcctccgcaag
gtgcaggacgaagccgcgcaaagcggcgacatgctcgtcgagacggggctgaccagcgtc
gccaccggccgcaccatggccgagatcgcgcgcgacgccgatgccgtgtggcaaaacggc
gccgagacgcacggcgccaggccagagcgcaaggcgcggtcgccagcggccaaggccgcc
cggacgccgaagcggcgcgccgccgccgcccgggcgcatccgcccgcctttcggcccgtc
cagctcgcgacgctggtggatgcggtgccgtccggcagtgggtggatccacgaagtcaaa
ttcgatggctatcgcgcgctgctggcgatcggcggcggcgcggcgcgcgcctatacgcgc
cacggtctggactggagcgaccggttcgcgccgatcgtcgcggcggcgcgcggcctcgcg
cccggcggcgcgctgatcgacggcgaggtggtggcgctcgatcgcaacggccggcccagc
ttctcggcgctgcaggcggcgctcaccgaaggcggcccgctccattatttcgccttcgat
cttctcgaggagggcggcgaggatctgaccagcctctcgacgctggaccgcaaggcgcgg
ctttcgcatctgctcgaaggcgtgtccccgccgatccactataccgagcatgtcgagagc
ggcggcgaggcgctgttccgccagctctgcgcggatggctatgaggggatcgtcgcaaag
gccgcgcacgccccctatcgcggcgcgcgcagccgcgcctggctgaaggtgaagtgcatc
cagcgccaggaattcatcctgatcggctataccgagagcgacaaggcgggtcgcgatctc
cgctcgctgctggtgggcgtgcgcgagagcgatgcgctgcgctatgccgggcgcgtcggc
accggcttcaccgccgccacccgcgccgatctgatccagcggctcgccccgctccgccgc
gccacgcccgccgcgccggtgccgcgcgccgccgcgcgcggcgtaatctgggtggagccc
gcgctggtggcggagatcgccttcgccgaattcaccgccgaggcggtggtgcgccacgcc
agcttcatcggcctgcgcgaggacaagcgcgccgaggaggtggtcgccgagcgccccgcc
gccgcgccaggcggcgcgaacggccgtttcggggtcgagatcagccatcccgagcgggtg
atcttcgccggcagcggcaccaccaagggcgcgctggccgcctattacgccgcgctcgcc
gagccgatgctgcgctgggtcggcaaccgcccggtcagccttgtccgctgcccgcagggc
cgcgccaagcactgcttcttccagaagcatgacgccggcagcttcggcgacgccgtcggc
catgtcgccattcgcgagaagaagggcggcgaggagcaatatctcgtcatcccggatggc
cgcggcctgctcacctgtgtgcagatggggacgatcgaattccacggctggggcgcgccg
gccgacgatgtcgaacatcccgatcggctcgtcttcgatctcgatcccgacgaggggctc
ggcttttccgaggtggcgtcggcggcgcaccagctgcacgatctgctcggcgaaatggga
ctgcgcagcttccccctcgtctccggcggcaagggcgtgcatgtcgtcgttccgctcgat
cgcgggcgcgactggccggcggtgaaggatttcgccagccgcttcgcccgggccgtggcg
gaggcgcatccgcgccgcttcaccgccaatatgcgcaagatcgagcggcgcggccgcatc
ttcgtggattggctgcgcaacgaacgcggcgccaccgccgtgctgccctattccgcgcgc
tcgcgcgatcgcgcgaccgtcgcggcgccggtgagctggcgggagctggcgaccttgccc
gacgcccagcccttcaccgtcgaggatgccgagaccctgctcgcccgcgccgccggcgcc
gagctgcgcggctggggagaggccgaccagacgctgcccgatctttga
DBGET
integrated database retrieval system
