Stenotrophomonas maltophilia R551-3: Smal_1201
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Entry
Smal_1201 CDS
T00733
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
smt
Stenotrophomonas maltophilia R551-3
Pathway
smt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Smal_1201
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smt03400
]
Smal_1201
Enzymes [BR:
smt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Smal_1201
DNA repair and recombination proteins [BR:
smt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Smal_1201
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SWI2_SNF2
AAA_30
ERCC3_RAD25_C
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ACF50906
UniProt:
B4SPL9
LinkDB
All DBs
Position
complement(1363164..1366628)
Genome browser
AA seq
1154 aa
AA seq
DB search
MSRTSYPAPPLPRAGQLRAWWRAPASPTALAWYLAQAARAHDAPLLVIARDNHGANQLEA
DLQTLLGGDPALPVVAFPDWETLPYDRFSPHPDIISQRLSALHRLPELKRGLVIVPVQTL
LQQLAPRSYVIGGSFDLKVGQRLDLEAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVYP
MGAEEPLRVELLDEDIDSIRAFDPESQRSLDKVEAVHMLPGREVPMDEASIARVLATLRE
RFDVDTRRSSLYQDLKSGLAPAGVEYYLPLFFERTATLFDYLPEGSLPVVCVGAGEAAET
FWAQTAERYEQRRHDVERPLLPPSALYLSPELLRERLNDTPRIEVWSADHARIADAHALG
DQPLPPLPVAAREAPAGDALKSFLGHYPGRVLIAADSPGRREALLEVLQAAELKPPVVAD
LPSFLADDARFAIAVAPLEDGFALDDPRIAVLTERQLFPERAGSTRRTRRAGREPEAIIR
DLGELTEGAPIVHEDHGVGRYRGLIAMDVGGMPGEFLEIEYAKGDRLYVPVAQLHLISRY
SGASAETAPLHSLGGEQWSKAKRKAAEKVRDVAAELLEIQARRQARAGLALQVDRAMYEP
FAAGFPFEETPDQLAAIDATLRDLSSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQV
AVLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVAAGTIDVIVGTHR
LLQPDVKFKDLGMVIVDEEQRFGVRQKEALKALRANVHLLTLTATPIPRTLNMAMAGLRD
LSIIATPPPNRLAVQTFITQWDNALLREAFQRELARGGQLYFLHNDVESIGRMQRELSEL
VPEARIGIAHGQMPERELEKVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRFG
LAQLHQLRGRVGRSHHRAYAYLVAPDRRSITPDAEKRLEAIASMDELGAGFTLATHDLEI
RGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIKQGKLPDLDAGEEVRGAEVELHVPAL
IPEDYLPDVHTRLTLYKRISSARDSDALRELQVEMIDRFGLLPDAAKHLFAIAELKLKAN
TLGIRKLDLGESGGRIVFESKPNIDPMAVIQLIQKQPNLYAMEGPDKLRIKHPLPLPEDR
FNAARALLTTLAPG
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgtacctcataccccgccccgccgctgccgcgcgccggccagctccgcgcctgg
tggcgcgctcccgcatcgccgaccgccctggcctggtatctggcccaggccgcgcgtgcg
cacgacgccccgctgctggtgatcgcccgtgacaaccacggcgccaaccagctcgaagcc
gacctgcagaccctgctcggcggcgaccctgccctgccagtggttgccttcccggactgg
gaaaccctgccctacgaccgcttcagcccgcatccggacatcatctcgcagcgcctgtcc
gccctgcaccgcctgcccgagctgaaacgcggcctggtgatcgtgccggtgcagaccctg
ctgcagcagctggccccgcgcagctatgtgatcggtggcagcttcgacctgaaggttggc
cagcgcctggacctggaagccgagaagcgccgcctggaaagcgccggctaccgcaacgtg
cctcaggtgatggacccgggcgacttcgcggtgcgcggcggcctgctcgacgtgtacccg
atgggtgccgaggagccgctgcgggtggagctgctggacgaggacatcgactcgatccgt
gccttcgatccggaaagccagcgctcgctggacaaggtcgaggcggtgcacatgctgccg
ggccgcgaagtgccgatggacgaagccagcatcgcccgcgtgctggccacgctgcgcgag
cgcttcgatgtcgatacccggcgcagttcgctgtaccaggacctgaaatccgggctggcc
ccggccggcgtcgagtattacctgccgctgttcttcgaacgcaccgccaccctgttcgac
tatctgcccgaaggcagcctgcccgtggtctgcgtgggcgctggcgaagcagcagaaacg
ttctgggcgcagaccgccgagcgatacgagcagcgccgccacgacgtcgaacggccgctg
ctgccgccgtcggcgctgtacctgtcgccggaactgctgcgcgaacgactgaacgacact
cctcgcatcgaggtatggtcggctgaccacgcgcgcatcgcagatgcccatgcgctgggt
gaccagccgctgccgccgctgccggtggccgcgcgcgaagcaccggccggcgatgcgctg
aagtccttcctcggccactacccgggccgcgtgctgatcgctgccgattcacccggccgc
cgtgaggcattgctggaagtgctgcaggccgccgaactgaaaccaccggtagtggccgac
ctgcccagcttcctcgccgacgacgcgcgcttcgcgatcgcggtggcgccgctggaggat
ggctttgcgctggacgatccgcgcatcgcggtactgaccgagcgccagctgttccctgag
cgcgccggcagcacccgccgcacgcgccgtgccggccgcgaaccggaagcgatcatccgc
gacctcggtgaactgaccgagggtgcgccgatcgtgcacgaggaccatggcgtcggccgc
taccgtggcctgatcgcgatggacgtcggcggcatgcccggcgaattcctggaaatcgaa
tacgccaagggcgaccgcttgtatgtgccggtggcccagctgcacctgatcagccgctac
tccggcgcttcagcggaaaccgcgccactgcattcgctcggtggcgagcagtggagcaag
gccaagcgcaaggccgccgagaaggtgcgcgatgtggctgcggagctgctggagatccag
gcccgtcgccaggcgcgtgccggcctcgcactgcaggtggaccgcgcgatgtacgagccg
ttcgccgccggtttcccgttcgaagaaaccccggaccagttggctgcgatcgacgccacc
ctgcgcgacctgtccagcagccagccgatggaccgcgtggtctgcggcgacgtcggcttc
ggcaagaccgaggtcgccgtgcgcgccgcgttcgccgccgccagtgccggcaagcaggtg
gccgtactggtgccgaccacgctgctggccgagcagcattaccgcaacttccgcgaccgc
ttcgccgattacccgatgaaggtcgaggtgctgtcgcgcttcaagagcaccaaggaaatc
aaggcggagctggagaaggttgccgccggcaccatcgacgtcattgtcggcacccatcgc
ctgctgcagccggacgtgaagttcaaggacctgggcatggtcatcgtcgacgaggagcag
cgtttcggtgtgcgccagaaggaagccttgaaggcgctgcgcgccaacgtgcacctgctg
accctgaccgctacgccgatcccgcgcacgctcaacatggccatggccggcctgcgcgac
ctgtcgatcatcgccacgccgccgccgaaccggctggcggtgcagaccttcatcacccag
tgggacaacgcgctgctgcgcgaagccttccagcgcgagctggcacgcggtggccagctg
tacttcctgcacaacgacgtggaaagcatcggccgcatgcagcgcgagctgtccgagctg
gtgccggaggcgcgcatcggcatcgcccacgggcagatgccggagcgcgagctggaaaag
gtgatgctggatttccagaagcagcgcttcaacgtgctgctgtcgaccacgatcatcgaa
tcgggcatcgacatccccaacgccaacaccatcatcatcaaccgcgccgatcgcttcggc
ctggcccagctgcaccagctgcgcggccgtgtcggtcgttcgcaccaccgtgcctacgcc
tacctggttgcccccgaccgtcgttcgatcaccccggatgccgaaaagcgcctggaagca
atcgcgtcgatggacgagctgggcgccggcttcaccctggccacgcacgatctggaaatc
cgcggcgccggtgaactgctgggcgaagaccagagcgggcagatggccgaggtcggcttc
agcctctacaccgagctgctggaacgcgcggttcgcagcatcaagcagggcaagctgccc
gacctggatgccggcgaggaagtgcgcggtgccgaggtcgagctgcacgtgccggcactg
attccggaagactacctcccggacgtgcacacccgcctgaccctgtacaagcgcatttcc
agcgcgcgcgacagcgatgcactgcgcgaactgcaggtggagatgatcgaccgcttcggc
ctgctgccggatgcggccaagcacctgttcgccatcgccgagctgaagctgaaagccaac
acgctgggcatccgcaagctggacctgggcgagagcggtggccgcatcgtgttcgagtcc
aagccgaacatcgacccgatggcagtgatccagctgatccagaaacaaccgaacctgtac
gccatggaagggcccgacaagctacgcatcaagcacccgctgccgctgccggaagaccgc
ttcaatgcggcccgcgccctcctgaccaccctcgccccgggttga
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