Sphingobacterium multivorum: I6J00_01330
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Entry
I6J00_01330 CDS
T07579
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
smui
Sphingobacterium multivorum
Pathway
smui03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
smui00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
I6J00_01330 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smui03400
]
I6J00_01330 (ligD)
Enzymes [BR:
smui01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
I6J00_01330 (ligD)
DNA repair and recombination proteins [BR:
smui03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
I6J00_01330 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
QQT45357
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All DBs
Position
320113..322812
Genome browser
AA seq
899 aa
AA seq
DB search
MGLSKYREKRSEEKTPEPFGGQPSGTELRFVVQKHDASHLHYDFRLEMDGVLKSWAVPKG
PSMDPSIKRLAMMVEDHPYDYRDFEGVIPKGQYGGGTVIVWDEGTYEPAESGLKEVAKQE
KDLLHQLYSGKLKFKLNGQKLKGEFALVKAHGRGDNGWLLMKLDDKYASEKDITTKDKSV
ISGKTIPQMEKSPDQVYGKHIIKKDSTVKDKRSTKNKASELINDQLEAVPTATSKKKTNI
QALLKNAPRQRFYSHIEPMLATLVDKPFDDEGWIYEVKWDGYRAVAFMNKGEVELKSRND
KSFNEKFYPIYDQLKELKLDAILDGEVVVLGGNGTANFGSLQNWRSEADGDLVYYLFDIL
WYQGQDLKDLTLLERKAILKEIIPKGNSILVSEHFETSGIHFLEEAKKLGLEGIMAKRKD
STYHLHNRSKDWLKIKANKRQEVVIGGYTLNDDSSKQFSSLLVGVYEGKKLIYTGKVGTG
FNVKLQKEMMKLFKPLVINKAPFSEEPDVNKPSRFRPNPPHATVTWLKPELVCEVSFAEL
TSDGIMRHPSFDGMREDKSAKKVILEEETPTEKMVDDMEDKIVTPRVKGPRKTLLNPTDK
TQVRKVNGHELKFTNLDKVFWPKEGITKRDLINYYYQAAPFILPYLKDRPQSMNRFPNGI
EGEGFYFKNVTDTAPEWAETYLYHSETDEKDRHYLVGKDEATLLYMANLGCIEMNPWSST
VKKPENPSFCIIDLDPDKNSFDQVVEAAQVTKSILDDMGATSYCKTSGSTGLHIYIPLGG
KYTYEQSKEFARVIVTLVHHELPKFTSLERSIKDRKGKMYLDFLQNRPHATIAAAYSVRP
KPGATVSMPLHWDEVKKGLKISDFHILNAIERMQSEGDIFKPVLGKGINLKSIVDKYYK
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atgggactatcgaaatatcgtgaaaagcgttctgaagagaaaaccccggaaccgtttggg
ggacagccaagtgggactgaactacgctttgttgtgcagaaacatgatgcctctcattta
cattacgactttcgtcttgagatggatggtgttctgaaaagttgggcagtaccaaaaggg
ccttctatggatcctagtattaagcgcctcgctatgatggtagaagatcatccctatgat
taccgagactttgaaggggtgatccccaaaggtcaatacggtggcggtaccgtgatcgtc
tgggatgaagggacgtatgagccagctgaaagtggccttaaggaagtagctaaacaagaa
aaagacctgttgcatcagctctattccggcaagcttaaatttaagctcaatggtcaaaag
ctaaaaggagagttcgctcttgttaaagcccacggacgtggagataacgggtggctgctc
atgaaactagacgataaatatgccagtgagaaagatattacaacaaaagataaatcagtg
atctcaggcaagacaattccacagatggaaaaatcacccgatcaggtttatggtaaacat
attatcaaaaaagacagtacggtaaaagataagcgttcaacaaaaaacaaagcatctgag
ctaatcaatgatcagcttgaagctgttcctacggcgacttccaaaaagaaaacgaatatt
caggcacttttaaaaaatgcgccaagacaaagattctattcccatatcgagcctatgctc
gctaccttggtcgataaaccctttgatgatgagggctggatctatgaagtcaagtgggat
ggatatcgcgcagtagcttttatgaataaaggtgaggtggaactaaaatcccgtaatgac
aagagctttaatgaaaaattctatcccatctatgatcaattgaaggagctgaaattagat
gccatcttggatggggaagttgttgttttaggtggaaacggcacggccaattttggctcg
ctccaaaattggcggagtgaagcggatggcgatctggtttattaccttttcgatatcctt
tggtatcagggacaggacctgaaagacctaacattgctcgagcgtaaggcaattttaaaa
gaaatcattcccaaaggcaacagcatcctggtcagtgaacattttgaaacttccggaata
cattttctggaggaagctaaaaagcttggtttagaagggattatggcgaagcgtaaagat
agcacctatcatctccataatcgttcaaaggactggcttaaaattaaagcaaataaaaga
caggaagttgtcataggcgggtatacactgaatgatgattcaagtaagcagtttagtagc
cttcttgtaggcgtctatgaaggaaaaaaattgatctacaccggaaaagtcggtactggc
tttaatgttaagcttcaaaaagaaatgatgaagctatttaaaccgcttgttattaataaa
gcacctttttctgaagagcccgacgtcaataagccctcgcgtttcaggccaaatccgcca
catgctaccgtgacatggcttaaacctgaacttgtctgtgaggtgagctttgcggaatta
accagcgacggtattatgcggcatccttcgtttgacggaatgcgggaagataaaagtgcc
aaaaaagtaattcttgaggaggaaactcctacagaaaaaatggtagacgatatggaagat
aaaattgttacacccagagtaaaagggccgcggaaaacactattaaatccgaccgataaa
acccaggtcagaaaggtaaatggccatgaactaaagtttaccaatttagataaggtgttt
tggccgaaagagggaataaccaaaagagacctcatcaattattactatcaggctgctcca
tttatattgccctatcttaaggataggccacagagtatgaaccgttttccgaacggcatt
gaaggcgaaggtttttattttaagaacgtgactgatacggcaccggaatgggcagagacc
tatctctaccacagtgaaacagatgaaaaggaccgtcattatcttgtgggcaaggacgaa
gccacattgctctatatggcaaatcttggctgcattgaaatgaacccctggagcagtacg
gttaaaaagcctgaaaatccatcgttttgtataattgaccttgatccggacaaaaattcg
tttgatcaggttgttgaagctgctcaggtcacaaagagcatattggatgatatgggggcg
actagctattgcaaaaccagtggctctacagggcttcatatctatataccgctcggtggc
aaatatacctacgaacaatctaaagagtttgcccgggtaattgtcacgctagtccatcat
gagcttcctaaattcaccagtctagagcggtccataaaagaccgcaaagggaaaatgtat
cttgattttttgcagaacaggccacatgcgaccattgcagccgcatattctgtccgcccc
aagccaggagcgacagtgtctatgccacttcattgggacgaagtgaaaaaagggttaaaa
ataagcgattttcatattttaaacgcgattgaaagaatgcagagcgaaggagatattttt
aaacctgtattgggaaaagggattaacctaaaaagtatagtggataaatattataaataa
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