KEGG   Sphingobacterium multivorum: I6J00_01330
Entry
I6J00_01330       CDS       T07579                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
smui  Sphingobacterium multivorum
Pathway
smui03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:smui00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    I6J00_01330 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:smui03400]
    I6J00_01330 (ligD)
Enzymes [BR:smui01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     I6J00_01330 (ligD)
DNA repair and recombination proteins [BR:smui03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     I6J00_01330 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase mRNA_cap_enzyme DNA_ligase_C
Other DBs
NCBI-ProteinID: QQT45357
LinkDB
Position
320113..322812
AA seq 899 aa
MGLSKYREKRSEEKTPEPFGGQPSGTELRFVVQKHDASHLHYDFRLEMDGVLKSWAVPKG
PSMDPSIKRLAMMVEDHPYDYRDFEGVIPKGQYGGGTVIVWDEGTYEPAESGLKEVAKQE
KDLLHQLYSGKLKFKLNGQKLKGEFALVKAHGRGDNGWLLMKLDDKYASEKDITTKDKSV
ISGKTIPQMEKSPDQVYGKHIIKKDSTVKDKRSTKNKASELINDQLEAVPTATSKKKTNI
QALLKNAPRQRFYSHIEPMLATLVDKPFDDEGWIYEVKWDGYRAVAFMNKGEVELKSRND
KSFNEKFYPIYDQLKELKLDAILDGEVVVLGGNGTANFGSLQNWRSEADGDLVYYLFDIL
WYQGQDLKDLTLLERKAILKEIIPKGNSILVSEHFETSGIHFLEEAKKLGLEGIMAKRKD
STYHLHNRSKDWLKIKANKRQEVVIGGYTLNDDSSKQFSSLLVGVYEGKKLIYTGKVGTG
FNVKLQKEMMKLFKPLVINKAPFSEEPDVNKPSRFRPNPPHATVTWLKPELVCEVSFAEL
TSDGIMRHPSFDGMREDKSAKKVILEEETPTEKMVDDMEDKIVTPRVKGPRKTLLNPTDK
TQVRKVNGHELKFTNLDKVFWPKEGITKRDLINYYYQAAPFILPYLKDRPQSMNRFPNGI
EGEGFYFKNVTDTAPEWAETYLYHSETDEKDRHYLVGKDEATLLYMANLGCIEMNPWSST
VKKPENPSFCIIDLDPDKNSFDQVVEAAQVTKSILDDMGATSYCKTSGSTGLHIYIPLGG
KYTYEQSKEFARVIVTLVHHELPKFTSLERSIKDRKGKMYLDFLQNRPHATIAAAYSVRP
KPGATVSMPLHWDEVKKGLKISDFHILNAIERMQSEGDIFKPVLGKGINLKSIVDKYYK
NT seq 2700 nt   +upstreamnt  +downstreamnt
atgggactatcgaaatatcgtgaaaagcgttctgaagagaaaaccccggaaccgtttggg
ggacagccaagtgggactgaactacgctttgttgtgcagaaacatgatgcctctcattta
cattacgactttcgtcttgagatggatggtgttctgaaaagttgggcagtaccaaaaggg
ccttctatggatcctagtattaagcgcctcgctatgatggtagaagatcatccctatgat
taccgagactttgaaggggtgatccccaaaggtcaatacggtggcggtaccgtgatcgtc
tgggatgaagggacgtatgagccagctgaaagtggccttaaggaagtagctaaacaagaa
aaagacctgttgcatcagctctattccggcaagcttaaatttaagctcaatggtcaaaag
ctaaaaggagagttcgctcttgttaaagcccacggacgtggagataacgggtggctgctc
atgaaactagacgataaatatgccagtgagaaagatattacaacaaaagataaatcagtg
atctcaggcaagacaattccacagatggaaaaatcacccgatcaggtttatggtaaacat
attatcaaaaaagacagtacggtaaaagataagcgttcaacaaaaaacaaagcatctgag
ctaatcaatgatcagcttgaagctgttcctacggcgacttccaaaaagaaaacgaatatt
caggcacttttaaaaaatgcgccaagacaaagattctattcccatatcgagcctatgctc
gctaccttggtcgataaaccctttgatgatgagggctggatctatgaagtcaagtgggat
ggatatcgcgcagtagcttttatgaataaaggtgaggtggaactaaaatcccgtaatgac
aagagctttaatgaaaaattctatcccatctatgatcaattgaaggagctgaaattagat
gccatcttggatggggaagttgttgttttaggtggaaacggcacggccaattttggctcg
ctccaaaattggcggagtgaagcggatggcgatctggtttattaccttttcgatatcctt
tggtatcagggacaggacctgaaagacctaacattgctcgagcgtaaggcaattttaaaa
gaaatcattcccaaaggcaacagcatcctggtcagtgaacattttgaaacttccggaata
cattttctggaggaagctaaaaagcttggtttagaagggattatggcgaagcgtaaagat
agcacctatcatctccataatcgttcaaaggactggcttaaaattaaagcaaataaaaga
caggaagttgtcataggcgggtatacactgaatgatgattcaagtaagcagtttagtagc
cttcttgtaggcgtctatgaaggaaaaaaattgatctacaccggaaaagtcggtactggc
tttaatgttaagcttcaaaaagaaatgatgaagctatttaaaccgcttgttattaataaa
gcacctttttctgaagagcccgacgtcaataagccctcgcgtttcaggccaaatccgcca
catgctaccgtgacatggcttaaacctgaacttgtctgtgaggtgagctttgcggaatta
accagcgacggtattatgcggcatccttcgtttgacggaatgcgggaagataaaagtgcc
aaaaaagtaattcttgaggaggaaactcctacagaaaaaatggtagacgatatggaagat
aaaattgttacacccagagtaaaagggccgcggaaaacactattaaatccgaccgataaa
acccaggtcagaaaggtaaatggccatgaactaaagtttaccaatttagataaggtgttt
tggccgaaagagggaataaccaaaagagacctcatcaattattactatcaggctgctcca
tttatattgccctatcttaaggataggccacagagtatgaaccgttttccgaacggcatt
gaaggcgaaggtttttattttaagaacgtgactgatacggcaccggaatgggcagagacc
tatctctaccacagtgaaacagatgaaaaggaccgtcattatcttgtgggcaaggacgaa
gccacattgctctatatggcaaatcttggctgcattgaaatgaacccctggagcagtacg
gttaaaaagcctgaaaatccatcgttttgtataattgaccttgatccggacaaaaattcg
tttgatcaggttgttgaagctgctcaggtcacaaagagcatattggatgatatgggggcg
actagctattgcaaaaccagtggctctacagggcttcatatctatataccgctcggtggc
aaatatacctacgaacaatctaaagagtttgcccgggtaattgtcacgctagtccatcat
gagcttcctaaattcaccagtctagagcggtccataaaagaccgcaaagggaaaatgtat
cttgattttttgcagaacaggccacatgcgaccattgcagccgcatattctgtccgcccc
aagccaggagcgacagtgtctatgccacttcattgggacgaagtgaaaaaagggttaaaa
ataagcgattttcatattttaaacgcgattgaaagaatgcagagcgaaggagatattttt
aaacctgtattgggaaaagggattaacctaaaaagtatagtggataaatattataaataa

DBGET integrated database retrieval system