Serratia marcescens WW4: SMWW4_v1c02800
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Entry
SMWW4_v1c02800 CDS
T02448
Symbol
rpoC
Name
(GenBank) RNA polymerase, beta prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
smw
Serratia marcescens WW4
Pathway
smw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SMWW4_v1c02800 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smw03021
]
SMWW4_v1c02800 (rpoC)
03400 DNA repair and recombination proteins [BR:
smw03400
]
SMWW4_v1c02800 (rpoC)
Enzymes [BR:
smw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SMWW4_v1c02800 (rpoC)
Transcription machinery [BR:
smw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SMWW4_v1c02800 (rpoC)
DNA repair and recombination proteins [BR:
smw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SMWW4_v1c02800 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AGE16087
LinkDB
All DBs
Position
313653..317876
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLNGSKEAERVYRAG
LASLHARVKVRITEDVKNAEGEWTSQTSIIDTTIGRAILWMIVPKGLPYAIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPAKKAEIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGEVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHDGILMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILVPRNTLLNEKACDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL
SNAKFVMNAAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMGKGDGEEVNGGETVANW
DPHTMPVISEVSGFIRFADMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAQGEDVLIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVSAGGSEFLEGEQAEVSRVKIANRQLEAEGKIAATFSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAQGEAPV
VPQVSAEEATANLAELLNAGLGGSDDE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattgaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aagattgctctggcctcgccagacatgatccgttcgtggtcgttcggtgaagttaagaag
ccggaaaccattaactaccgtacgttcaaacctgagcgtgacggccttttctgcgcccgt
atcttcgggccggtaaaagattacgagtgcctgtgcggtaagtacaagcgcttgaaacac
cgcggcgtgatctgtgagaagtgcggcgttgaagtgacccagactaaagtgcgccgtgag
cgcatgggccacatcgagctggcttccccgactgcgcacatctggttcctgaaatcgctg
ccatcccgcatcggtttgctgctggatatgccgctgcgtgacatcgaacgcgtactgtac
ttcgaatcctatgtggtggtcgaaggcggtatgaccaacctcgagcgtcgtcagatcctg
actgaagagcagtatctggacgcgctggaagagttcggtgacgaattcgacgccaagatg
ggtgcggaagccattcaggccctgttgaaaaacatggatctggaagccgagtgcgagcag
ctgcgtgaagagctgaacgaaaccaactccgaaaccaagcgcaagaagctgaccaagcgt
atcaagctgctggaagcgttcgtacagtccggtaacaagccggagtggatgatcctgacc
gtgctgccggtactgccgccggatttgcgtccgctggttccgctggatggcggccgtttc
gcgacgtcggatctgaacgatctgtatcgccgcgtgatcaaccgtaacaaccgtctgaaa
cgcctgctggatctggctgcgcctgacatcatcgtgcgcaacgaaaagcgtatgctgcaa
gaagcggtagacgccctgctggataacggccgtcgcggtcgtgccatcaccggttccaac
aaacgtcctctgaaatctttggccgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctcggtaaacgcgttgactactccggccgttccgtaatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgcctaaaaagatggcgctggagctgttcaaaccgttc
atctacggcaagttggagctgcgtggcctggccaccaccatcaaagccgccaagaaaatg
gttgagcgtgaagaagccgtcgtttgggatatcctggacgaagtgatccgcgaacacccg
gtactgctgaaccgtgcaccaaccctgcaccgtttgggtatccaggcgtttgaaccggtt
ctgatcgaaggtaaagcgatccagctgcacccgctggtttgtgcggcctataacgccgac
ttcgatggtgaccagatggccgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtccaccaacaacatcctgtccccagcgaacggcgagccaatcatc
gttccttctcaggacgttgtactgggtctgtactacatgacccgcgactgtgttaacgcc
aagggcgaaggcatggtgctgaacggttccaaagaagctgagcgcgtataccgcgccggc
ctggcgtcgctgcatgcgcgcgttaaagtgcgtatcaccgaagacgtcaagaacgccgaa
ggcgagtggacctctcagaccagcatcatcgacaccaccatcggccgcgccatcctgtgg
atgatcgtaccgaaaggtctgccgtacgcgatcgttaaccagcctttgggcaagaaagcg
atctccaagatgctgaacacctgttaccgcatcctgggcctgaagccgaccgtaatcttt
gctgaccagatcatgtacaccggttttgcttacgcagcccgttccggcgcttccgtaggt
atcgacgacatggttatcccggccaagaaagcggagatcatcgaagaagcggaaaccgaa
gttgccgagatccaggagcagttccagtctggtctggttaccgccggcgaacgctacaac
aaagtgatcgatatctgggctgccgcgaacgaacgcgttgcgaaagcgatgatggaaaac
ctgtcggtagaagacgtggttaaccgtgacggcgaagtggaacagcaagtttccttcaac
agcatctttatgatggccgactccggtgcgcgtggttccgccgctcagattcgtcagctg
gccggtatgcgtggtctgatggcgaagccggacggctccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacccacggtgctcgt
aaaggtctggcggataccgcactgaaaaccgcgaactccggttatctgacccgtcgtctg
gttgacgtggcgcaggacctggtggtgaccgaagacgactgtggcacccacgacggcatc
ctgatgactccggttatcgaaggtggcgacgtgaaagagccgctgcgtgaacgcgttctg
ggccgtgtgacggcagaagacgtcctcaagccgggtacggcggacattctggtgccacgc
aacaccctgctgaacgagaaggcgtgtgacctgttggaagagaactctgtcgacagcgtt
aaagtccgttccgtggtgagctgtgaaaccgacttcggtgtgtgtgctaactgctatggt
cgcgacctggcacgtggccacatcatcaacaaaggcgaagccatcggcgttatcgcggca
cagtccatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcattcaggtgaaaaacaagggtagcatcaagctg
agcaacgcgaagttcgttatgaacgccgcaggcaagctggtgatcacctcgcgtaacacc
gaactgaaactgatcgacgaattcggccgtaccaaagaaagctacaaggtgccttacggc
gccgtgatgggcaaaggcgacggtgaagaagttaacggcggcgaaaccgtcgctaactgg
gatccgcacaccatgccggtcatcagtgaagtcagcggcttcattcgcttcgccgacatg
gtcgacggccagacgattactcgtcagaccgacgaactgaccggtttgtcttctctggtt
gttctggacagcgcagagcgtaccggtagcggtaaagacctgcgtccggcactgaaaatc
gttgacgctcagggcgaagacgtattgatcccaggtactgatatgcctgctcaatacttc
ctgccgggcaaagcgatcgttcagctggaagacggcattcagatcggtgcgggtgatacc
ctggcgcgtattcctcaggaatccggcggtaccaaggatattaccggtggtctgccgcgc
gttgccgacctgttcgaagcgcgtcgtccgaaagagccggcaatcctggctgaaatcagc
gggattatctcgttcggtaaagagaccaaaggcaaacgtcgcctggtgatctctccgctg
gacggcagcgacgcttacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggcgaagtggtggaacgtggcgacgtcgtttccgacggcccagagtctccgcacgacatt
ctgcgtctgcgtggcgtgcatgcggttacccgctacatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataagcacatcgaagttatcgttcgtcagatg
ctgcgtaaaggcactatcgttagcgctggtggctccgagttcctggaaggcgagcaggct
gaagtgtctcgcgtcaagattgccaaccgtcagctggaagctgaaggtaaaatcgcggca
accttctcgcgcgatctgctgggtatcaccaaggcatccttggcgaccgagtccttcatc
tccgccgcatcgttccaggaaacgacgcgcgttctgaccgaagctgccgtagccggcaag
cgtgatgaactgcgtggcctgaaagagaacgtcatcgtgggccgtctgatcccagccggt
accggttacgcttatcatcaggatcgcatgcgtcgccgtgctcagggtgaagcgccggtt
gttccgcaagtcagcgcggaagaagcgacggctaacctggccgagctgctcaacgcaggc
ctgggcggtagcgacgacgagtaa
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integrated database retrieval system
