Stenotrophomonas maltophilia D457: SMD_0023
Help
Entry
SMD_0023 CDS
T02061
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
smz
Stenotrophomonas maltophilia D457
Pathway
smz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
smz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SMD_0023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smz03400
]
SMD_0023
Enzymes [BR:
smz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SMD_0023
DNA repair and recombination proteins [BR:
smz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SMD_0023
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
CCH10626
LinkDB
All DBs
Position
26837..29329
Genome browser
AA seq
830 aa
AA seq
DB search
MSLHQYRRKRRLGGGTGQTPEPDDTPARGDPQRRPTFVIQLHHASSRHYDFRLEMDGVLK
SWAVPKGPSLRVGEKRLAVEVEDHPLSYAGFEGDIPEGHYGAGHVEVFDQGTWACEGDPL
QALAAGKIDFVLHGQRLAGGWKLVRTAMKGRQVQWLLIKRDDEQARDAEADDLLDAHVPK
RASTVMKRTGGKAGRAVPAARTATRKADARWHARALKLDGARDTPYPHGFKPQLTDHRDS
APDGARWLHEIKWDGYRLLADLHDGEVKLRSRNGLDWTDDFPEVVQAVQALPVRDARLDG
ELVVLDKEGRSDFAALQRVIDGSSKHPLRYIVFDLPGVANADISRAPLLERKALLKDLIG
PVPGILAFSEHVIDQGPQVFDASGQAGFEGIVSKQVDAPYVNTRARSWVKVKHEDTDEFV
IVGYTAPRGSRVGFGSLLLATPDKEGLRYVGRVGTGFDDENLRALLKALQPLAVKTPVLQ
LPAHVPFRAASVRWVKPVTVAEVAFRGWGKEGLLRQASFKRLRSDKQKEDLGMSNATAVA
EAGGEVQITHPERVVFPSQGLGKGDVADYYRRMARWILPEIAGRPLSLLRCPDGVGKACF
FQKHHGPGLGDAVHAVPLQQKSGREDYVYIDDARGLLQLVQMNTLELHPWGATVADTEHP
DRLVFDLDPGNGVSWAQVKSGARDVRDRLQQVGLESFVRLSGGKGLHVVVPLQPKAGWDE
AKAFCEAFAQAMAKEQPDRYVATMSKAKRSGVIFIDWLRNTRGATSVCSWSLRARDSAGV
AVPLRWEELARISAADAFPMGKALARAQRLKSDPWQGIAQLKQTLPRMDL
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgcaccagtaccggcgcaagcgccggcttggcggaggcacagggcagacgccg
gagcctgacgacacacccgcacgcggtgatccgcagcggcggccaaccttcgtcatccag
ctgcaccatgccagttcgcgccactatgacttccgccttgagatggacggcgtgctgaag
agctgggcagtgccgaaaggtccttcgcttcgcgtcggcgagaagcggctggccgtggaa
gtggaagatcacccgttgtcctacgctggcttcgagggcgacattcccgaaggccactac
ggcgcggggcacgtggaggtgttcgatcagggcacctgggcctgcgaaggcgatccactg
caggcgctggcagctggaaagatcgacttcgtactgcatggacaacgcctggccggtggc
tggaagctggtgcgcacggcaatgaagggacgccaggtgcagtggctgctgatcaagcgc
gacgacgagcaggcgcgcgatgccgaagcagacgatctgctggacgcgcacgtgcccaag
cgcgcatccaccgtgatgaagcgcactggggggaaggcagggcgtgctgtgcccgccgca
cgcacggctacccgcaaggccgatgcacgctggcatgcgcgcgcgctgaaactggacggc
gcacgtgacacgccctacccgcatgggttcaaaccgcaattgaccgatcatcgcgacagc
gcgccggacggcgcgcgttggctgcacgagatcaagtgggacggctatcgcctgctggcc
gatctacacgacggcgaggtgaagctccgctcccgcaatggcctggattggaccgatgac
ttccccgaggtcgtgcaggccgtgcaggcgctgccggtgcgcgatgcgcgcctggacggt
gagctggtggtgctggacaaggaagggcgcagcgatttcgcagcgttgcagcgcgtgatc
gatggaagctcgaagcatccgctgcgctacatcgtgttcgatcttccgggtgtggccaac
gcggacatcagtcgtgcgccattgctggaacgcaaagcgctgctgaaggatctcatcgga
ccggtgcccggcatcctggccttcagcgaacatgtgatcgaccagggcccgcaggtgttc
gatgccagtggccaggccggattcgaaggcatcgtcagcaagcaggtggatgccccgtac
gtgaatacccgcgcgcgcagctgggtgaaggtgaagcacgaagacaccgacgagttcgtg
attgtcggctacacggcccccaggggctcgcgggtgggtttcggatcattgttgctggca
acgccggacaaggagggtctgcgctatgtgggccgcgtcggtaccggcttcgacgacgag
aacctgcgcgcgctgctcaaggcattgcagccactggcagtaaagacgcccgtgctgcag
cttccggcgcatgtgccgttccgcgccgccagcgtgcgctgggtgaagccggtgacggtg
gcggaagtggcgttccgtggctggggcaaggaaggcctgctgcgccaggccagtttcaag
cggctgcgcagcgacaagcagaaggaggacctgggaatgagcaacgcaacagcagttgct
gaagccgggggtgaggtccagatcacgcatccggagcgtgtggtgtttcccagtcaggga
ctgggcaaaggcgacgtggccgactattaccggcgcatggcgcgctggatcctgcccgaa
attgccggacggccgctgtcattgctgcgctgccccgatggggtgggcaaggcctgtttc
ttccagaagcatcatggccccggcctgggcgacgcggtgcacgcggtgcccctgcagcag
aagagcggccgcgaggactatgtctatatcgacgacgcacggggcctgctgcagctggtg
cagatgaacacgctggagctgcatccgtggggtgcgaccgtagcagacaccgagcatccg
gatcgactggtattcgatctcgatcctggcaacggcgtcagctgggcacaggtgaaatcg
ggtgcacgcgatgtgcgtgaccgcctgcagcaggtgggcctggagagcttcgtgcggctg
tctggcggcaaggggctgcatgtggtggtaccgctgcagcccaaggctggctgggacgag
gcgaaggcgttctgcgaggcctttgcgcaggcaatggcaaaggagcaacctgatcgctat
gtggcgacgatgagcaaggccaagcgcagtggcgtcatcttcatcgactggttgcgcaac
acccgaggggccaccagcgtgtgctcgtggtcgctgcgcgcgcgcgattccgccggtgtg
gcagtgccgctgcgctgggaggaactggcgcgtatcagtgctgccgacgcctttcccatg
ggcaaggcgctggcgagggcgcaacgcctgaagagtgacccatggcagggcatcgcgcag
ttgaagcagacgctgccgcgcatggacctgtag
DBGET
integrated database retrieval system
