Stackebrandtia nassauensis: Snas_5808
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Entry
Snas_5808 CDS
T01194
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sna
Stackebrandtia nassauensis
Pathway
sna03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Snas_5808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sna03400
]
Snas_5808
Enzymes [BR:
sna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Snas_5808
DNA repair and recombination proteins [BR:
sna03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Snas_5808
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ADD45438
UniProt:
D3PZ09
LinkDB
All DBs
Position
6173211..6177266
Genome browser
AA seq
1351 aa
AA seq
DB search
MSSKDLSGLLNAALDEPGLARVRELAAEGGPTAEQVHVTAPAAARPFTVAALAQAERTVL
AVTATSREGEELTQSLAGLLPDGSVAFYPAWETLPHERLSPRSDTVGKRLALLHRLAHPQ
GAPLRVVVAPVRSLLQPQLKGLGDLKPVRLAVGESTDLSDLAAELSDLAYARVDLVEKRG
EFAVRGGILDIFPPTDEHPSRVEFFGDEIESIRSFAVADQRSLDKADTLFAPPCRELLLS
PRVRERAAELGQQHPGLAELCEQLAQGIPVEGMESLTPALLGADQLELFVQTMPRGTVVV
QCDPERIRSRAHDLVATSEEFLQASWAAAATGGKAPIDLDAAAFKSLSDVRQAASDHGCP
WWSMGPFGVTEDLSPAQLEERKRARELAEITGEGFEELVVADETSVTVTATPAPLYHGNS
VKVTGDVKRWTNDGWRVCLVFAGHGLAERAVEQLAEAGVGASLADSVTRPDSDGNPTAPT
EPAIWASAPDDGLAGGRQPGPVGGADLNSPFTPPTASSKADAGQGGAGASGGSQAGGPAD
AGHSGPGSVGFGGSAATADAGHSGPGSVGFGGSAATADAGRAGGSGRAGAVAAGAAGHAV
TGTVGRDGSVAVLRPGHVTVTVGGLSHGIVDEAAKLAILTGDDISGGKGATTRDMRRMPS
RRKGGVNPLELSNGDYVVHEQHGVGRYIELVRRTVNGAEREYLVIEYAASKRGQPADRLF
VPTDALDQLTRYVGGEMPSVHKLGGSDWQKAKSRAKKAVREIAAELIKLYAARQATEGHA
FGPDTPWQRELEDAFPYQETPDQAGAIDEVKSDMMGRTPMDRLICGDVGYGKTEIAVRAA
FKAVTDGKQVAVLVPTTLLASQHLNTFTERMSQFPVTIKQLSRFQTDAEAEQIRKGLIAG
EVDIVVGTHRLLQTETRFKDLGLVIVDEEQRFGVEHKEKLKALRAHVDVLAMSATPIPRT
LEMAITGIREMSTITTPPEERHPVLTFVGGYEDKQVGAAIRRELLRDGQVFYLHNRVESI
EKAATRLREIVPEARVVVAHGKMGENRLEQIMQDFWNGEFDVLVSTTIIESGIDIPNANT
LIVERADLLGLSQLHQIRGRVGRGRERAYAYFMYPPEKPLTEQAHERLATVAQHTELGAG
MYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGDAVRTFKGAKEEILTEVKIDLP
VDAHIPYDYIPVERLRLEMYRKLAEVRDDAELDEVRTEMADRYGDLPAEVDNLVHVARFR
LLARAAGLSDVSLQGRHIRLSSITLSDSKQLRLKRHYPDSVYKKAAELISVPRPHTARVG
GSPMEGPALLQWCAELIKDVTEAPAPAATPA
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgaaagacctctccggcctgctgaacgccgccctggacgagccgggcctggcg
cgggttcgcgaactcgccgccgaaggcggcccgacggccgagcaggttcacgtgaccgct
ccggccgcggcgcggccgttcaccgtcgcggcgttggcgcaggccgaacgcaccgtgctg
gccgtgaccgccaccagtcgcgagggcgaggagctgacgcagtcgctagccgggctgctg
ccggacgggtcggtggccttctaccccgcctgggagacgctgccgcacgagcggttgtcg
ccgcgaagcgacaccgtcgggaagcggctggcgctgctgcaccggctggcccatccgcag
ggcgcgccgctgcgggtcgtggtggcgccggtgcgcagcctgctgcaaccgcagctgaag
ggcctcggcgacctgaagccggtgcggctggccgtcggcgagtccaccgacctgtcggat
ctggccgccgagctgtccgatctggcgtacgcgcgggtggacctggtcgagaagcgcggc
gagttcgcggtgcgcggcggcatcctggacatcttcccgcccaccgacgagcatccgtcc
cgtgtggagttcttcggcgacgagatcgagtcgatccgctcgttcgcggtcgccgaccag
cggtcgctcgacaaggccgacacgctgttcgcgccgccgtgccgggaactcttgctgtcg
ccgagggtgcgcgagcgcgccgccgaactgggtcagcagcacccgggtctggccgagctg
tgcgagcagctggcgcagggcattccggtggagggcatggaatcgctgaccccggcgctg
ctgggtgccgaccagctggagctgttcgtgcagacgatgccgcgcggcaccgtcgtggtc
cagtgcgacccggagcggatccgttcccgcgcccacgatctggtggccacgagcgaggag
ttcctccaggccagctgggcggcggccgccaccggcggcaaggcccccatcgacctggac
gcggccgcgttcaagagcctgtccgacgtgcgccaggccgcgtccgaccacggctgcccg
tggtggtccatgggtccgttcggtgtcaccgaggacctcagcccggcgcagctggaggaa
cgcaaacgcgcccgcgaactcgcggagatcaccggcgagggcttcgaggaactggtcgtc
gccgacgagacctcggtgaccgtcacggcgaccccggcaccgctgtaccacgggaactcg
gtcaaggtcaccggcgacgtcaagcggtggacgaacgacggctggcgggtgtgcctggtg
ttcgcgggccacggcctggccgaacgcgccgtggagcagctggccgaggcgggcgtgggc
gccagcctcgccgactcggtgacccggcccgacagcgatggaaaccccacggccccaacc
gaacccgcgatctgggccagtgcgccggacgacgggctggccggtggcaggcagccggga
ccggtgggcggcgcggacctgaactcccccttcacgccaccgaccgcgtcgtccaaggcc
gacgcgggccaaggtggagccggggcgagcggcggtagccaagcgggcggcccggccgac
gcgggccattcgggaccaggctcggtcggcttcggcggttcggccgccacagccgacgcg
ggccattcgggaccaggctcggtcggcttcggcggttcggccgccacagccgacgcgggt
cgagcgggcggctccgggcgggccggggccgtggcggccggtgccgctggccacgccgtg
acgggcaccgtcggccgcgacggctcggtggccgtactgcggccgggccacgtcaccgtc
accgtcggcgggctgagccacggcatcgtcgacgaggccgcgaaactggcgatcctcacc
ggcgacgacatctccggcggcaagggcgccaccacccgcgacatgcgcaggatgccgtcg
cggcgcaagggcggggtcaacccgctcgaactgtccaatggcgactatgtcgtgcacgag
cagcacggcgtcggccgctacatcgaactggtgcgccgcaccgtcaacggcgccgagcgc
gagtacctggtcatcgagtacgccgccagcaaacgcggccagcccgccgaccggctgttc
gtgccgaccgacgcgctcgaccagctgacccgctacgtcggcggcgagatgcccagcgtc
cacaagctgggcggttccgactggcagaaggcgaagtcgcgcgccaagaaggccgtccgc
gagatcgccgccgaactcatcaagctgtacgcggcgcggcaggccaccgagggccacgcc
ttcgggccggacacgccgtggcagcgcgaactcgaggacgcgttcccgtaccaggagacc
ccggaccaggccggagccatcgacgaggtcaagtcggacatgatgggccgcaccccgatg
gaccggctcatctgcggcgacgtcggctacggcaagaccgagatcgcggtgcgggccgcg
ttcaaggcggtcaccgacggcaagcaggtcgcggtgctggtacccacgacgctgttggcc
agccagcacctgaacaccttcaccgagcggatgtcgcagttcccggtgacgatcaagcag
ctgtcgcggttccagaccgacgccgaggccgagcagatccgcaagggcctgatcgcgggc
gaggtcgacatcgtggtcggcacccaccggctgttgcagaccgagacccggttcaaggac
ctgggtctcgtcattgtggacgaagagcagcggttcggcgtcgagcacaaggagaagctg
aaggcgctgcgcgcccacgtcgacgtgctggcgatgtcggcgacgccgatcccgcgcacc
ctggagatggcgatcaccggcatccgcgagatgtccacgatcaccaccccgccggaggag
cggcacccggtgctgaccttcgtgggcggctacgaggacaagcaggtcggcgccgcgatc
cggcgcgagctgctgcgcgacggccaggtgttctacctgcacaaccgggtcgagtcgatc
gagaaggccgccacccggctgcgcgagatcgtgccggaggcgcgggtcgtggtcgcgcac
ggcaagatgggcgagaaccggctggaacagatcatgcaggacttctggaacggcgagttc
gacgtcctggtgtccacgacgatcatcgagtcgggcatcgacatccccaacgccaacacc
ctgatcgtggagcgcgccgacctgctgggtctgtcgcagctgcaccagatccggggccgg
gtgggccggggccgggaacgcgcctacgcctacttcatgtatccgccggagaagccgctg
accgagcaggcccacgagcggctggcgaccgtcgcgcagcacaccgaactgggcgcgggc
atgtacgtggccatgaaggacctggagatccggggcgcgggcaacctcttgggcggcgag
cagtccgggcacatcgcgggcgtcggcttcgacctgtacgtgcggatggtcggcgacgcg
gtgcgcaccttcaagggcgccaaggaggagatcctcaccgaggtcaagatcgacctgccg
gtggacgcccacatcccctacgactacatcccggtggaacggctgcggctggagatgtac
cgcaagctggccgaggtccgcgacgacgccgaactggacgaggtccgcaccgagatggcc
gaccgctacggcgatcttcccgccgaagtggacaacctggtccacgtcgcccggttccgg
ctgctggcccgcgccgccggtctgtccgatgtgtcgctccagggccgccacatccggctg
tcgtcgatcacgctgtcggactccaaacagctgcgcctcaagcgccactaccccgactcg
gtgtacaagaaggccgccgagctgatctcggtgccgcgcccgcacaccgcgcgggtcggc
gggtccccgatggagggcccggcactgttgcagtggtgcgccgaactcatcaaggacgtg
accgaggcaccagccccggccgctactcctgcatga
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