Streptomonospora nanhaiensis: OUQ99_26995
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Entry
OUQ99_26995 CDS
T08686
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
snah
Streptomonospora nanhaiensis
Pathway
snah03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
snah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OUQ99_26995 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snah03400
]
OUQ99_26995 (mfd)
Enzymes [BR:
snah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OUQ99_26995 (mfd)
DNA repair and recombination proteins [BR:
snah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OUQ99_26995 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
MFD_D3
DUF4404
RecG_dom3_C
ERCC3_RAD25_C
CdvA
Motif
Other DBs
NCBI-ProteinID:
WAE72789
LinkDB
All DBs
Position
6280724..6284332
Genome browser
AA seq
1202 aa
AA seq
DB search
MSLIGLLADVSRDPALHSAIEAARRGLDPHLDLVAPAALRPFMVGALAADAPVGAGRPVL
AVTATEREASDLTDALCSLLPDDSVALFPAWETLPHERLSPRSDTVGQRLAVLRRLAHPD
PADPLTTPLRVVVAPVRSVLQPLVAGLGDLEPVRIRPGDEASLEDVVTALADTGYARVDL
VEKRGDMAVRGGILDVFPPTEEHPLRLEFWGDTVEDIRYFQVADQRSIAPREGDEGSRAG
AASGLFAPPCRELLLTDTVRDRARALAEEHPSLAEILHKIADGVSVEGMEAFAPVLAERM
EPFFTYLPEGAMVVGCDPERIRTRAVELEATSAEFLDASWINAASGGEAPIDLGASAYMS
VAELRAAAAGRDLPWWGLTPFSAGDEGGASEEDDAVVVGAAPAESYRGDTERALADIKGW
LHDNWSVVLVTQGHGPAERLVAMLRDAGLGAALASDLADPPPPAVATVTTGLVDHGFLLR
TVHTVVLTETDLAGQKSSTRDMRRMPSRRRGTVDPLQLKPGDYVVHEQHGVGRYLEMVSR
QIQGATREYLLIEYAPSKRGQPGDRLFVPTEQLGEVTRYVGGEAPTLSKMGGAEWSKAKS
RARKVVREIAGDLIRLYSARQASPGHAFGPDTPWQRELEDAFPYVETPDQLAAIDEVKKD
MSRSVPMDRLICGDVGYGKTEVAVRAAFKAVQDGKQVALLVPTTLLVQQHMSTFTERYAS
FPVTVKPMSRFQTDGEVEVTREGLRSGEVDVVIGTHRLLSSETRFKDLGLVIIDEEQRFG
VEHKEALKRLRTQVDVLAMSATPIPRTLEMGLTGIREMTTILTPPEERHPVLTFVGPYED
KQITAAIRRELMREGQVFFVHNRVASIDKVAASIKRLVPEARVAYAHGQMNEQQLEKVMV
DFWEKNFDVLVSTTIVESGLDVPNANTLIIDRADTYGLSQLHQLRGRVGRGRERAYAYFL
YPPEKPLSETAYERLATVAQHTEMGAGMYVAMKDLEIRGAGNILGAEQSGTIAGVGFDLY
VRMVGEAVAELKGDPDAVEEIETRVELPINAHIPHDYVPGERLRLQSYKRIAGVGSEEDI
LAAYEELTDRYGPPPQQVDNLMAVARFRVLAKSAGLSDVVMQGNQIRFSPVDLRESQELR
LRRMYPKSLHKETTRTLLVPVPKAGGLGGKPLRDLELLKWCSDLVNAVFEPHRKAGRSTP
AQ
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgagccttattggacttctcgccgacgtctccagggacccggcactgcacagcgcgatc
gaggccgcccgacgcggcctcgatccccacctcgacctcgtcgcgccggccgcgctgcgc
cccttcatggtgggcgcgctggccgccgacgcccccgtgggcgcgggtcggcccgtcctc
gccgtcaccgccaccgagcgcgaggcctcggacctgaccgacgccctgtgctcgctgctg
cccgacgactccgtcgcgctcttccccgcctgggagacgctcccgcacgagcggctctcc
ccccgctcggacacggtcggacagcgtctcgccgtcctgcgccgcctggcgcaccccgac
cccgccgacccgctcaccaccccgctgcgggtggtcgtcgcccccgtgcgcagcgtcctg
caaccgctcgtggccggactgggcgacctggagccggtccgcatccgccccggcgacgag
gcgtccctggaggacgtggtcacggccctggccgacaccggctacgcccgggtcgacctg
gtcgagaagcgcggcgacatggccgtgcgcggcggcatcctggacgtgttcccgcccacc
gaggagcaccctctgcggctggagttctggggcgacaccgtcgaggacatccgctacttc
caggtggcggaccagcggtccatcgccccgcgcgagggcgacgagggctcgcgcgccggc
gccgcctccgggctgttcgcaccgccgtgccgcgaactcctgctcaccgacaccgtgcgc
gaccgcgcacgggccctggccgaggagcacccctccctcgccgagatcctgcacaagatc
gccgacggcgtctccgtcgagggcatggaggcgttcgcgcccgtgctcgccgaacgcatg
gagcccttcttcacctacctgcccgagggcgcgatggtggtgggctgcgaccccgagcgc
atccgcacccgcgcggtggagctggaggccaccagcgccgagttcctcgacgcctcgtgg
atcaacgccgcctccggcggcgaggcccccatcgacctgggcgcgtccgcctacatgtcc
gtcgccgagctgcgcgccgccgcggccgggcgcgacctgccctggtggggcctcacgccc
ttcagcgcgggcgacgaggggggcgcctccgaggaggacgacgccgtcgtcgtcggcgcc
gcacccgccgagtcctaccgcggggacaccgagcgcgccctggccgacatcaagggctgg
ctgcacgacaactggagcgtcgtcctggtcacccagggccacggccccgccgagcggctg
gtcgcgatgctgcgcgacgccggcctgggcgccgccctcgcctccgacctggccgaccct
cccccgcccgccgtcgccaccgtcaccaccgggctggtcgaccacgggttcctgctgcgg
acggtccacacggtggtgctcaccgagaccgacctggccggacagaagtcctccacccgc
gacatgcgcaggatgccgagcaggcggcgcggcaccgtggacccgctccagctcaaaccg
ggcgactacgtcgtccacgagcagcacggcgtgggccgctacctggagatggtcagccgc
cagatccagggggccacccgcgagtacctgctcatcgagtacgcgccctccaagcgcggc
cagccgggcgaccgcctcttcgtccccaccgagcagctcggcgaggtcacccggtacgtg
ggcggcgaggcccccaccctgtccaagatgggcggcgccgagtggagcaaggccaagagc
cgcgcccgcaaggtcgtccgcgagatcgccggcgacctcatccgcctgtactcggcccgc
caggcctccccgggccacgcgttcggtccggacaccccgtggcagcgggaactcgaggac
gccttcccgtacgtggagacgcccgaccagctcgcggccatcgacgaggtcaagaaggac
atgtcccggtccgtccccatggaccggttgatctgcggcgacgtcggctacggcaagacc
gaggtcgcggtgcgcgccgcgttcaaggcggtccaggacggcaagcaggtggctctgctg
gtgcccaccacgctgctggtgcagcagcacatgtccacgttcaccgagcggtacgcgtcg
ttcccggtcaccgtcaaaccgatgtcgcggttccagaccgacggcgaggtcgaggtgacc
cgcgaggggctgcgcagcggcgaggtggacgtcgtcatcggcacgcaccgcctgctgtcg
tcggagacccgcttcaaggacctgggcctggtcatcatcgacgaggagcagcgcttcggc
gtggagcacaaggaggccctcaaacggctgcgcacccaggtcgacgtgctggcgatgtcg
gcgacgccgatcccgcgcaccctggagatgggcctgaccggcatccgcgagatgaccacg
atcctcaccccgccggaggagcgccacccggtgctcaccttcgtgggcccctacgaggac
aagcagatcaccgccgcgatccgccgcgagctgatgcgcgagggccaggtgttcttcgtg
cacaaccgcgtggcctccatcgacaaggtcgcggcgagcatcaagcgcctggtgccggag
gcccgggtggcctacgcgcacggtcagatgaacgagcagcagctcgagaaggtcatggtc
gacttctgggagaagaacttcgacgtgctggtctccacgaccatcgtcgagtccggcctg
gacgtgcccaacgccaacaccctcatcatcgaccgcgccgacacctacgggctctcgcag
ctgcaccagctccgcggccgggtgggccgcgggcgcgagcgcgcctacgcgtacttcctg
tacccgccggagaaaccgctgtccgagaccgcctacgagcgcctggccacggtcgcccag
cacaccgagatgggcgcgggcatgtacgtggccatgaaggacctggagatccggggcgcg
ggcaacatcctgggcgcggagcagtccggcaccatcgcgggcgtgggcttcgacctgtac
gtgcgcatggtgggcgaggccgtggccgagctcaagggcgatccggacgcggtcgaggag
atcgagacccgggtcgagctgcccatcaacgcgcacatcccgcacgactacgttccgggc
gagcgactgcggctccagtcgtacaagcggatcgccggcgtgggcagcgaggaggacatc
ctcgccgcgtacgaggagctcaccgaccggtacgggcccccgccccagcaggtggacaac
ctgatggcggtggcgcggttccgggtgctcgccaagtcggcggggctctcggacgtcgtc
atgcagggcaaccagatcaggttctccccggtcgacctgcgcgagtcgcaggagctgagg
ctgcggcggatgtaccccaagtccctgcacaaggagacgacgcggaccctgctggtaccg
gtgcccaaggccggtggcctgggcggcaagccgctgcgcgacctggaactcctcaagtgg
tgcagcgacctggtcaacgccgtcttcgagccgcacaggaaagccggccggagcaccccg
gcccagtag
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