Spongiibacter nanhainus: I6N98_01720
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Entry
I6N98_01720 CDS
T07977
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
snan
Spongiibacter nanhainus
Pathway
snan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6N98_01720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snan03019
]
I6N98_01720
03009 Ribosome biogenesis [BR:
snan03009
]
I6N98_01720
Enzymes [BR:
snan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I6N98_01720
Messenger RNA biogenesis [BR:
snan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I6N98_01720
Ribosome biogenesis [BR:
snan03009
]
Prokaryotic type
rRNA helicases
I6N98_01720
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Flavi_DEAD
CMS1
AAA_19
DUF6702
Motif
Other DBs
NCBI-ProteinID:
QQD18618
UniProt:
A0A7T4UQC4
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All DBs
Position
complement(355369..357249)
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AA seq
626 aa
AA seq
DB search
MTSTPADSAPAPAQRFDQLDLIAPLLMALDQVGYESPSPIQAATIPELLSGRDLLGQAQT
GTGKTAAFALPVLSRIDVSRRKPQALVLAPTRELAIQVAEAFERYANFMPGFKVLPIYGG
QGYKGQLDELRRGAHVIVGTPGRVMDHMRRKTLVLDELRHLVLDEADEMLRMGFIDDVEW
ILQQLPTQRQVALFSATMPTAIKRIAQQYLNEPAEIRIQAKTATAENIAQRYWLAKGMSK
QEALARILEVEERDASIIFVRTKTATVELAEALQGQGHAAAPLNGDIPQSQRERTVDALK
AGKLDILVATDVVARGLDVERISHVINYDVPYDTEAYVHRIGRTGRAGRSGEAILFITPR
EKRMLYAIERATRQKITAMTPPSPEAISERRIAKFQQRISDVLSAGKLAPYRSLIEDFQK
QHPDADGLDIAAALACLAQGDSPLFAPPKKLASTASSETESSAKRKDKDKGRKDTHRVAT
SDEPDMERFRIEVGRQHGVQPGNIVGALANEAGLDAEHIGRVKIFDDHSLVDLPEGMPKP
IFKQLQRVWVSGQQLKISRVGESPEPRRNTSGELPPGKLPRKRKAPSEHRKSAPGDTKRK
SLKAKAASRPAKPGKGKPNKNKPKPQ
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgaccagcactcccgccgactcggcacccgcgcctgcacagcgctttgaccaacttgac
ctgatcgctcccttgttaatggcactggaccaagtgggttacgaatcaccctcgccgatt
caggccgccacgattcccgagttgctgtccggccgggacctactgggacaggcgcaaacc
ggcacgggcaaaacagcggctttcgcactgccggtactgtcccgcatcgacgtgtcccgg
cgtaagcctcaggcactggtgttggcgccaacccgggagctggctatccaggttgccgaa
gcctttgaacgctatgccaactttatgcctggctttaaggtgctacccatctacggtggc
cagggctataaaggacaactggacgagttgcgccggggcgcccacgtcattgtcggcact
ccgggccgggtaatggatcatatgcgccgcaaaaccctggtgctggatgagctccgccac
ctggtgctggacgaagctgacgaaatgctgcgcatgggcttcatcgatgacgttgagtgg
atactccaacaactacccacacaacgacaggtggcgctgttctccgccaccatgcccaca
gccatcaagcgcatcgctcagcaatatttgaacgagccggcagaaatccgcatccaggcc
aaaaccgccaccgccgagaatattgcccagcgctactggctcgccaaaggcatgagcaag
caagaagcactggcccgtattctggaagtggaggagcgggacgccagcatcatctttgta
cgcaccaagaccgccaccgttgaactggccgaagcactgcagggccagggccacgccgcg
gcaccactcaacggcgacattccccagtcccagcgggagcgcactgtggacgccctcaag
gccggcaaattggatatcctggtggccaccgacgtggtcgcccggggcctggacgtggaa
cggattagccacgtcatcaactacgacgtgccctacgataccgaagcctacgtccaccgc
atcggtcgtaccggtcgtgccggccgcagcggcgaggccattctctttattacgccccgc
gagaagcggatgctctacgccattgagcgggccacgcggcagaaaatcaccgcgatgacg
ccgcccagccccgaggccattagcgagcgccgcattgccaaattccagcaacgcatcagc
gatgtattgagcgccggcaaactggcgccctaccgcagcctgatcgaagacttccaaaag
cagcatccagatgccgatgggctggatatcgccgctgcgctggcctgtctggctcagggc
gattcaccactgtttgcccctcccaaaaagctcgccagcacggcctcaagcgaaacggag
agcagcgccaagcggaaggacaaagacaaggggcggaaagacacacatcgcgttgccact
agcgacgagccggacatggaacgcttccgcattgaagtcggtcgtcaacacggtgtgcag
cccggcaatattgtcggcgcattagccaacgaagccggtctcgacgccgagcatataggc
cgggttaagatctttgacgaccacagcttggtggatttgcccgagggcatgcccaagcct
attttcaagcagttacagcgggtgtgggtatccggccagcaactcaaaatcagccgggtt
ggcgagtctccagaaccgaggcgcaacactagcggcgagctgccccccggcaagctaccc
cgcaagcgcaaagcccccagcgagcaccgcaaatctgcccccggcgacaccaagcgcaaa
tccctcaaggccaaggcggcgtcgcgccctgccaagcccggcaaaggcaagccgaacaag
aataagcccaaaccgcagtag
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