Spongiibacter nanhainus: I6N98_14400
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Entry
I6N98_14400 CDS
T07977
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
snan
Spongiibacter nanhainus
Pathway
snan03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
snan00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I6N98_14400 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snan03021
]
I6N98_14400 (rpoC)
03400 DNA repair and recombination proteins [BR:
snan03400
]
I6N98_14400 (rpoC)
Enzymes [BR:
snan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I6N98_14400 (rpoC)
Transcription machinery [BR:
snan03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I6N98_14400 (rpoC)
DNA repair and recombination proteins [BR:
snan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I6N98_14400 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QQD17541
UniProt:
A0A7T4UPE4
LinkDB
All DBs
Position
complement(3137764..3141975)
Genome browser
AA seq
1403 aa
AA seq
DB search
MKDLLNLLKQGQQSDEFDSIRIGLASPELIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERILYFESYVVTDPGMTTLEKGQLLNDEQYFDAMEEFGDDFVAKM
GAEAIQHLLKELDLNEEVGRLREEVPATNSETKIKKLSKRLKLLEALADSGNKPEWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIFGKLEARGLATTIKAAKKMVEREPPEVWDILAEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYWMTRSRINAPGENMVFSSPSEVQRAFAGG
KVHLQARIKCRLNEVTFDDEGVRQEVNHIVETTVGRVVLWQVVPDGLPFELVNQAMTKKA
ISKLLNACYRDVGLKATVILGDQLMYTGFEYSTRSGASIGVNDFEIPEEKARIVDAAGAE
VVEIEKQYASGLVTQGEKYNKVIDIWSRANDLVSKSMMEGLSKETVVNRDGEEEEQDSFN
SVYIYADSGARGSPAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITEDDCGADEGLLMTPVIEGGDIIETLGDRVL
GRIVAKDVLIPGTDDVAVEAGVMLDEKRVVELEEQGIDEIEVRSPITCHTKHGVCSMCYG
RDLARGHRVNRGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRATAQDSIQVKQEGRVRL
HNLKYVEREDKTLVAVSRSGELAVTDSSGRERERYKLPYGAIIKVADRDTVAAGDIVANW
DAHTHPIVTEVAGYVKLSGMEEGITIKRQADELTGLTSIVVMEQSERPAAGKDMRPAVTL
VDADGNELSLAGTNVPAHYFLPDYAIVSLEDGMEVKVGDIVAKIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTVSFGKETKGKRRLVITPSDGKPLADGSDHYEVLIPKWR
QLTVFEGEQVEKGEVVSEGPLSPHDILRLKGVEELAKYIVNEIQDVYRLQGVKINDKHIE
VICRQMLRKVNILTAGDSSFIKGEQVEYVRLLEENERLIAEDKIPASFERELLGITKASL
ATESFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSQRRLKKE
ERESSVSAQDVEAALSEALSDNG
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagatctattgaatctgttaaagcagggacaacaaagcgacgaattcgactctatc
cggatcggcctggcgtcgccggaactgattcgttcctggtcctatggcgaagttaaaaag
cctgagaccatcaactatcgtaccttcaaacccgagcgggacggtttgttctgcgccaag
atttttggtccagtgaaggactacgagtgcttgtgcggtaaatacaagcgccttaagcat
cgcggtgttatctgcgaaaagtgcggcgtggaagtggcgctggccaaagtgcgtcgggag
cgcatgggccacattgaactggcgagcccggttgcccacatctggtttctgaagtctctg
cccagccgtattggtttgctgctggacatgacgctgcgggatatcgagcgcattttgtat
ttcgagtcctacgttgtcaccgatcccggcatgaccacgttggaaaaaggccaactgctc
aatgacgagcaatacttcgacgccatggaagaattcggcgacgactttgtggccaagatg
ggcgccgaagcgattcagcaccttttgaaagagctcgacctcaacgaagaagtgggccgc
ctgcgtgaagaagtgcccgcgaccaattctgagaccaaaattaagaagctgtccaaacgt
ttgaaactgctcgaggcgctggctgactctggcaacaaacccgagtggatggtaatggaa
gtgctgccggttctgccgccggatctgcgtcctctggtacccctggacggtggccgcttt
gcgacttccgacctgaatgacttgtaccgccgggtcatcaaccggaataaccgtctcaag
cggctgctggacctcagtgcaccagacatcatcgtgcgcaacgaaaagcgtatgctgcaa
gagtctgtagacgccctgttggataacggtcgccgcggtcgggcaatcaccggctccaac
aagcgtccgctgaaatctttggcggacatgattaaaggtaagcagggtcgcttccgtcag
aacctgctgggtaagcgggtcgactactcgggccgctccgttatcgttgttggtccgact
ctgcgtctgcatcagtgcggtctgcccaagaaaatggcgctggagttattcaagcccttc
atttttggcaagctggaagcccgcggcttggcgactaccattaaagccgccaagaaaatg
gtcgagcgggaaccgccggaagtgtgggatattctcgccgaggtgatccgcgagcacccg
gtcatgttgaaccgggcgcccacccttcaccgtttgggtatccaggcttttgagccggtg
ttgatcgaaggtaaagccattcagctccacccgctggtatgtgctgcctacaacgctgac
tttgacggtgaccagatggcggtccacgtaccactgaccctggaagcccagttggaagcc
cgggcattgatgatgtccaccaacaacatcctgtcgcccgctaacggtgagcctattatc
gtaccgtctcaggacgttgtactgggtctctactggatgactcgctctcgcattaatgcg
cccggcgagaacatggtgttttctagccccagcgaagtacagcgtgcctttgctggcggt
aaagtccaccttcaagcccgtattaaatgccgcctgaacgaagtcacctttgatgatgaa
ggcgtgcgccaggaagtgaaccacattgttgagaccacagtaggtcgtgtggtgttgtgg
caagtcgtgcccgatggcctgccctttgagctggttaaccaggcgatgaccaagaaagct
atctctaaactgcttaacgcttgctatcgggatgtcggtctgaaggccacggttatcctg
ggtgaccaattgatgtacaccggttttgagtactccactcgctcaggtgcgtcgataggt
gttaacgacttcgaaattcccgaagaaaaagcgcgcatcgtcgatgccgctggtgccgaa
gtggtcgagatcgaaaagcagtatgcttctggtctggtaactcagggtgaaaaatacaac
aaggttatcgatatctggtcacgggccaacgacttggtgtctaagtcgatgatggaaggc
ctgtccaaagagacagtcgttaaccgcgacggcgaagaggaagagcaggactcctttaac
tcggtatatatctatgccgactccggcgcccggggctccccggcacagattcgtcagttg
gccggtatgcggggcctgatggccaagcccgatggctccatcatcgagacgccgattacc
gcgaacttccgcgaaggtttgaacgtactgcagtactttatctctacccacggtgctcgt
aagggtctggcggataccgcactgaagaccgcgaactcaggttatctgactcgccgtctg
gtggatgtggcacaggacttggtcattactgaggacgattgtggcgccgacgaaggtctg
ttgatgaccccggttatcgaaggtggcgacattatcgagactctgggtgatcgcgttctg
ggccggattgttgctaaagatgtgcttatccccggtaccgatgacgtggccgttgaagct
ggtgtaatgctggacgaaaaacgcgttgtcgagctggaagagcagggtattgacgagatc
gaagtgcgctcgcccattacctgccacaccaagcacggcgtttgctccatgtgttacggc
cgtgacctggctcgtggccaccgtgttaaccgcggtgagtccgtcggtgttatcgccgca
cagtctatcggtgagcccggtacccagctgaccatgcgtaccttccacatcggtggtgcg
gcatcccgggcaacagcccaggacagtatccaggttaagcaggaaggtcgtgtacgcctg
cacaacctaaagtacgtcgagcgcgaagacaaaaccttggtggcggtaagccgctctggt
gaactggccgtgactgatagcagtggtcgtgagcgggagcgctataaactgccctacggt
gccatcattaaagtcgccgaccgcgatacggttgccgccggtgatatcgttgctaactgg
gacgcgcacacccaccccatcgtcaccgaggtggcgggttacgtgaagctgtctggtatg
gaagagggcatcaccatcaagcgtcaggccgacgagttaaccggtctgaccagcatcgtg
gtgatggaacaatctgagcgtccggcggccggtaaagatatgcgtccggcggtcaccttg
gtcgatgccgacggcaatgagttgtcgctggctggtaccaacgtgcccgcccactacttc
ttgcctgactatgcaatcgtcagcctcgaagacggtatggaagtgaaggtcggtgacatt
gttgccaaaattccgcaagaaagctcgaaaacacgggacatcaccggtggtctgccacgg
gttgctgacctctttgaggcccgtaagcccaaagagcccgctatcctggccgagatttcc
ggtaccgttagcttcggtaaggaaaccaaaggcaagcgtcgtctggtgatcacaccttcc
gatggcaagccgctggcagatggtagcgaccactacgaggtattgattcccaagtggcgc
cagctgactgtctttgaaggtgagcaggttgagaagggtgaggttgtatctgaaggtccg
ctcagccctcacgatattctgcgcttgaaaggcgtagaggagttggccaagtacatcgtc
aacgagattcaggacgtttaccgtctgcagggcgttaagattaacgataagcatatcgaa
gttatctgccgccagatgctgcgcaaggtgaacattctgaccgccggtgactccagcttt
atcaagggcgagcaagtggaatacgttcgcctgctggaagaaaacgagcgtctgatcgcc
gaagacaagatccccgccagcttcgaacgcgagctgctgggtatcaccaaagcctcgctg
gcaaccgagtccttcatttcggcagcctctttccaggaaaccacccgggtactgaccgag
gcggccgtcactggcaagcgggactacctgcgcggtttgaaagaaaacgtcgtggtgggt
cgcttgattcctgcgggtaccggtctggcctaccacagccagcgccgcctgaagaaagag
gagcgggagtcttcggtttctgctcaggatgtcgaagcggctctgtcggaggccttgagc
gacaacgggtaa
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