Sphingomonas naphthae: PQ455_07800
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Entry
PQ455_07800 CDS
T08850
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
snap
Sphingomonas naphthae
Pathway
snap03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
snap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PQ455_07800 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snap03400
]
PQ455_07800 (ligD)
Enzymes [BR:
snap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PQ455_07800 (ligD)
DNA repair and recombination proteins [BR:
snap03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PQ455_07800 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
FlaA
Motif
Other DBs
NCBI-ProteinID:
WCT75107
LinkDB
All DBs
Position
1646148..1648646
Genome browser
AA seq
832 aa
AA seq
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MAKAAAPAGDDPLARYNAKRDFSRTKEPAGQRGETPDSHLFMVQKHDATRLHWDFRLELE
GVLKSWAVTRGPSLDPDDKRLAVRTEDHPLSYATFEGTIPKGEYGGGTVMLWDRGTWTPL
PGKDPIKTLAEGHLHFTLDGERMKGEWIMVRLKPRGREKAENWLLRKVADDFAGGSDDLV
GQAITSVETGRTMAEIAGGEEPKVAKRRPAAAKKAAPAKASRGKLPTFREPQLATLVDAV
PAGSGWIHEVKYDGYRTLIGVGGGKAKAWTRTGLDWSDRFAGVVEAAAALPGSALIDGEV
VAMDANGHPSFQRLQAALKDGGTGALHYFAFDLLEQDGEDLTSLPNTERKARLAALLHDA
PEPLHYAEHVTGSGEAMFSGICAEGLEGIISKRADAPYRTGRRSPAWVKVKCTRRQEFVI
VGWTPSDKARGFRSLLLGLHEDGRLRYAGKVGTGFNAALMDDLLARMKPLERKTAPVEAP
RAAVRGAHWVTPKLVAEVAFAEFTEEGVLRHASFLGLREDKPAGDVTEEKAAPAAKATKR
AKAATQAPAGITSPDRVIDPDSGITKGQLAAYYAEVAEPLLAWLSRRPVSLVRCPQGRAK
HCFFQKHDSGSFGDHVHHVPIREKDGSTEPYLYVDDAEGMMACVQMGTIEFHGWGSMIEA
VEAPDRMVFDLDPDEGLGFEAVKHAAFLLRDELAGLGLKSWPLLSGGKGVHVVVPLDASA
EWPAVKDFASRFSRALAAAHPDRFTANMKKVERKGRIFLDWLRNQRGATAVLPYSARARA
NTPVAAPVTWEELRDVETPARWSVLDGAELVKRAGSKALRGWAVARQALPAA
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
gtggcgaaggcggcggccccggcgggcgacgatccgctggcgcgctacaatgccaagcgc
gatttcagccgcacgaaggagccggcgggacagcgcggcgagacgcccgacagccacctc
ttcatggtgcagaagcatgacgcgacccggctgcactgggacttccggctcgagctggag
ggcgtgctcaagagctgggcggtgacgcgcgggccgagcctcgatcccgacgacaagcgc
cttgccgtccgcaccgaggatcaccccctctcctacgccaccttcgaggggacgatcccc
aagggcgaatatggcggcggcacggtgatgctgtgggatcgcggcacctggacgcctttg
cccggcaaggaccccatcaagacgctcgccgagggccacctccacttcacgctcgatggc
gagcggatgaagggcgaatggatcatggtccgcctgaaaccgcgcgggcgcgagaaggcc
gagaactggctgctgcggaaggttgcggacgatttcgccggcgggtcggacgatctggta
ggccaggccatcaccagcgtcgaaaccggtcgtacgatggccgagatcgcggggggcgaa
gaacccaaggtcgcgaagcgcaggccggccgccgcgaagaaggccgcccctgccaaggcg
tccaggggcaagctccccaccttccgcgaaccgcaactggccaccttggtcgatgccgtc
cccgccggatcgggctggatccacgaggtgaagtatgacggctatcgcaccctgatcggc
gtcggcggcggcaaggccaaggcgtggacgcgcaccgggctcgactggtcggatcgcttc
gccggcgtggtcgaggcggcggccgccctccccggatcggcgctgatcgatggcgaagtg
gtggcaatggacgccaacggccaccccagcttccagcgattgcaggccgcgctgaaggat
ggcggcaccggcgcgctccactatttcgccttcgacctgctggagcaggacggtgaggat
ctgacgtcgctgcccaacaccgagcgcaaggcgcggctggcggcgctgctgcacgacgcc
cccgaaccactccattatgccgagcatgtcaccggatcgggcgaggcgatgttttcggga
atctgcgccgaggggctggaaggcatcatctccaagcgcgccgacgccccctatcgcacc
ggccgccgcagcccggcctgggtgaaggtgaaatgcacccgccggcaggaattcgtgatc
gtcggctggacgccctccgacaaggcgcgcggcttccgcagcctgctgcttgggctgcat
gaggatggccggctgcgctacgccggcaaggtcggcaccggtttcaacgcggcgctgatg
gacgatctgctcgcccggatgaagccgctcgagcgcaagaccgccccggtcgaggccccc
cgcgcggcggtgcgcggggcgcattgggtaacgccgaagctcgtcgccgaggtcgccttc
gccgaattcaccgaagagggcgtgctgcgccacgccagcttcctcggtctgcgcgaggac
aagcccgcaggcgacgtcaccgaggagaaagccgcccccgccgccaaggccaccaaacgc
gccaaggccgccacgcaggccccagccggcatcaccagccccgatcgggtgatcgacccc
gacagcggcatcaccaagggccagctcgcggcttattatgccgaggtcgccgagccgctg
ttggcatggctctcccgccgccctgtcagcctcgtccgctgcccccagggccgcgccaaa
cattgcttcttccagaagcatgacagcggcagctttggcgatcatgtccaccacgtcccc
atccgcgagaaggacggatcgaccgaaccctatctctacgtcgacgatgccgaagggatg
atggcctgcgtgcagatgggcacgatcgaatttcacggctggggatcgatgatcgaggct
gtagaggcccccgaccggatggtcttcgatctcgatcccgatgaggggctgggcttcgag
gcggtgaagcacgccgccttcctgctgcgcgacgaactcgccgggctcggcctgaagagc
tggccgctgctgtcgggcggcaagggcgtgcatgtcgtggtgccgctggatgcgtcggcc
gaatggccggcggtgaaggatttcgccagccgcttctcccgcgcgctggccgcggcccac
cccgatcgcttcaccgccaacatgaagaaggtggagcgcaagggccgcatcttcctcgac
tggctccgcaaccagcgcggcgccaccgccgtcctgccctactccgcccgcgcccgcgcc
aacaccccggtcgcggcgccggtgacatgggaggagttgcgcgacgtggagacgcccgcg
cgctggtcggtgctggacggcgccgaactggtgaagcgggctggcagcaaggcgctcagg
ggctgggccgtcgccagacaggccctgcccgccgcgtga
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