Streptomyces nojiriensis: JYK04_03678
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Entry
JYK04_03678 CDS
T07326
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
snf
Streptomyces nojiriensis
Pathway
snf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
snf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JYK04_03678 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snf03400
]
JYK04_03678 (mfd)
Enzymes [BR:
snf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JYK04_03678 (mfd)
DNA repair and recombination proteins [BR:
snf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JYK04_03678 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
4HBT_3
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
QTI45870
LinkDB
All DBs
Position
complement(3947729..3951262)
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVTRDAALAEAVTAAGDGKRMHVDLVGPAAARPFAIAALARQTGRTVLAVTA
TGREAEDLAAALRSLLPPDEVVDYPSWETLPHERLSPRSDTMGRRLAVLRRLVHPSKDDP
AAGPVSVLVAPIRSVLQPQVKGLGELVPVSLRQGGGADLGEITEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRIEFWGDEVEEIRYFKVADQRSLEIAEHGLWAPPCRELL
LTDAVRERAAALAEAHPELGELLHKIAEGIAVEGMESLAPVLVDEMELLIDVLPAGSMAV
VCDPERVRTRAADLVATSQEFLMASWAATAGGGEAPIDVGAASLRGIADVRDRARELDMM
WWSVSPFAADESAGGGDTLKLGMHAPEAYRGDTARALADTKGWIADGWHTVYLTEGHGPA
ARTVEVLGGEGIAARLEPELRALEPSLVHVACGSIDNGFVDPVLRLAVLTETDLTGQRTA
TKDLGRMPTRRRKTIDPLTLEAGDYIVHEQHGVGRYVEMVQRTVQGATREYLLVEYAPAK
RGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYS
ARMAAPGHTFGPDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGDVGYG
KTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVKVKALSRFQSESESK
ATLEGLHEGSVDVVIGTHRLFSQETRFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLT
MSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQCF
YIHNRVESIDRAAAKLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVES
GIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATI
AQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYIRMVGEAVADYRAAVEGQ
VEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRSIASANSEADIKAVREELTDRYGKL
PEPVENLLLVAGLRMLARACGVGDITLQGNNIRFGPVELRESQELRLKRLYPGTVLKPAT
SQVLVPRPKAGKIGGKPVVGRELLAWTGEFLTTILGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggactgctcgacgccgtcacccgtgatgccgccctcgccgaggcggtc
accgcggccggggacggcaagcgcatgcacgtggacctggtcggccccgccgccgcgcgg
cccttcgcgatcgccgcgctggcccgccagaccgggcggaccgtgctggcggtcaccgcc
accgggcgcgaggccgaggacctggccgccgcgctccgctcgctgctgccccccgacgag
gtcgtggactacccgtcctgggagacgctcccgcacgagcggctcagcccgcgcagcgac
accatgggccgccggctcgccgtcctgcgccgcctcgtgcacccgagcaaggacgacccg
gccgcgggtcccgtgagcgtgctcgtcgcgcccatccggtccgtgctccagccgcaggtc
aaggggctgggggagctggtaccggtcagcctgcgccagggcggcggcgccgacctcggc
gagatcaccgaggcactggccgccgccgcgtacgcgcgggtcgagctcgtcgagaagcgc
ggggagttcgccgtgcgcggcggcatcctggacgtgttcccgcccaccgaggaacacccg
ctgcgcatcgagttctggggcgacgaggtcgaggagatccgctacttcaaggtcgccgac
cagcgctccctggagatcgccgagcacgggctgtgggccccgccctgccgcgagctgctg
ctgaccgacgcggtacgggagcgggccgcggccctcgccgaggcccaccccgagctcggc
gagctgctgcacaagatcgccgaggggatcgccgtggagggcatggagtccctcgccccg
gtcctcgtcgacgagatggaactgctgatcgacgtgctgcccgccgggtcgatggccgtg
gtctgcgacccggagcgggtccggacccgggccgccgacctggtggcgacgagccaggag
ttcctgatggcctcctgggcggccaccgcgggcggcggcgaggcccccatcgacgtcggt
gcggcctcgctccgcgggatcgccgacgtccgcgaccgggcccgcgagctggacatgatg
tggtggtcggtgtcccccttcgccgccgacgagagcgccggcggcggcgacaccctcaag
ctcggcatgcacgccccggaggcctaccgcggcgacaccgcccgggcgctggccgacacc
aagggctggatcgccgacggctggcacaccgtctacctcaccgagggccacggcccggcc
gcccgtaccgtcgaggtgctcggcggcgagggcatcgcggcccggctggagccggaactg
cgcgccctggagccgagcctggtccacgtcgcctgcggctcgatcgacaacggcttcgtc
gacccggtgctgcgcctggccgtcctcaccgagaccgacctgaccggccagcgcaccgcc
accaaggacctcggccggatgccgacccggcgccgcaagaccatcgacccgctgaccctg
gaggccggcgactacatcgtccacgagcagcacggcgtgggccgctacgtcgagatggtc
cagcgcacggtgcagggcgccacccgcgagtacctgctggtggagtacgcgccggccaag
cgcgggcagcccggcgaccggctctacatccccaccgaccagctggagcaggtcaccaag
tacgtcggcggcgaggccccgaccctgcaccggctcggcggcgccgactggaccaagacc
aaggcgcgcgcgaagaaggcggtcaaggagatcgccgccgacctcatcaagctctacagc
gcgcgcatggcggcccccggccacaccttcgggccggacaccccctggcagcgcgagctg
gaggacgccttcccgtacgcggagacgcccgaccagctcaccaccatcgccgaggtcaag
gaggacatggagaagtcggtcccgatggaccggctgatctgcggcgacgtcggctacggc
aagaccgagatcgccgtcagagccgcattcaaggcggtccaggacggcaagcaggtcgcc
gtcctcgtcccgacgaccctgctcgtgcagcagcacttcggcaccttctccgagcgctac
agccagttccccgtcaaggtgaaggcgctctcgcgcttccagagcgagagcgagtccaag
gccaccctggaaggcctccacgagggctcggtggacgtggtcatcggcacccaccggctg
ttctcgcaggagacgaggttcaaggacctcggcctggtcatcgtcgacgaggagcagcgc
ttcggcgtggagcacaaggagcagctgaagaagctccgcgccaacgtggacgtgctcacc
atgtccgcgaccccgatcccgcgcaccctggagatggcggtgaccggcatccgcgagatg
tcgacgatcaccaccccgccggaggagcggcacccggtcctgaccttcgtcggcccgtac
gaggagaagcagatcggcgcggccatccgccgcgagctgctgcgcgagggccagtgcttc
tacatccacaaccgggtcgagtccatcgaccgggcggccgccaagctgcgcgagatcgtg
cccgaggcgcggatcgcgacggcccacggccagatgtcggagcaggccctggagcaggtt
gtcgtcgacttctgggagaagaagttcgacgtgctcgtctcgaccacgatcgtcgagtcg
ggcatcgacatctccaacgccaacaccctgatcgtggagcgcggcgacaacttcggcctg
agccagctgcaccagctgcgcggccgcgtcgggcgcggccgcgagcgcggttacgcgtac
ttcctgtacccgccggagaagccgctgaccgagaccgcgcacgagcggctcgcgacgatc
gcccagcacaccgagatgggcgcgggcatgtacgtggcgatgaaggacctggagatccgc
ggcgcgggcaatctgctcggcggcgagcagtccggtcatatcgcgggcgtcggcttcgac
ctctacatccgcatggtcggcgaggccgtggccgactaccgggccgcggtcgagggccag
gtggaggaggagccgccgctggaggtcaagatcgagctgccggtcgacgcgcacgtcccg
cacgactacgcgccgggcgagcggctgcgcctgcaggcgtaccggtccatcgcctcggcc
aactccgaggcggacatcaaggccgtacgggaggagctcaccgaccgctacggcaagctg
ccggagccggtggagaacctgctgctggtggccgggctgcggatgctggcccgggcctgc
ggggtcggcgacatcaccctccagggcaacaacatccgcttcgggccggtcgagttgcgc
gagtcgcaggagctgcggctcaagcggctctatccgggaacggtgctcaagcccgccacc
tcgcaggtgctggtcccgcgcccgaaggcgggcaagatcggcgggaagccggtggtcggc
cgggagctgctggcctggacgggggagttcctcaccaccatcctcggctcgtag
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