Streptomyces nojiriensis: JYK04_07302
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Entry
JYK04_07302 CDS
T07326
Symbol
pel
Name
(GenBank) Pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
snf
Streptomyces nojiriensis
Pathway
snf00040
Pentose and glucuronate interconversions
snf01100
Metabolic pathways
snf02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
snf00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
JYK04_07302 (pel)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
JYK04_07302 (pel)
Enzymes [BR:
snf01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
JYK04_07302 (pel)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Pectinesterase
Beta_helix
FANC_SAP
DUF4987
Motif
Other DBs
NCBI-ProteinID:
QTI49430
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Position
8038189..8040528
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AA seq
779 aa
AA seq
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MSASPHRRPTGRRRLALTGAATLVAAGLGAVPLVVKADAVAPSDLAHGVLPARDGWAASG
SGTTGGRAADAAHVFTVSTRAELVRALAAGPAGAPRIVRVKGLIDAGTDDSGKPQSCADH
AAGTGYSLDSYLKAYDPAVWGRAKVPSGAQEDARRAAQARQAARMVFTVPARTTVIGVPG
TGAGITGGSLVVKNADNVIIRNLSLTDVRDCFPQWDPTDGSTGNWNSAYDAVSLRGATHV
WVDHNSFSDDPHPDSANPVRFGREYQVHDGALDITNASDLVTVGYNTFSNHDKTMLIGSS
DKDTKLRVTLHHNVFRGIVQRAPLARVGQIHLYDNYYDTTASEGYAHSYSVNSRAGAQVV
AENNYWKLSSDRKTSQLLSGDGTGAIAGSGNLVGGAPVDLVAAHNSADPGKKIKTTVDWR
PTLTAGLEPAAGLPAKLAAKAGAGVLTETGAKAAPAPSGPVGGRTLTVAADGSAAHRSVQ
AAVDAATAGDTVLVSRGPYRETVNVPASKHGLTLKGATGNAEDVVITYDNASGTPKPGGG
TYGTAGSATATFSANDITVTGVTVENTWERSAHPDVRDTQAVAVNASGDRQKYLDSRFIG
HQDTVLNWAPAATGQYRQYFRHCFIAGDVDFVFGNATAVYDHVNITLRDRGAAAGGPAGY
LAAPNTDAAKPYGILITDSTISSPARPGTYYLGRPWHPGASAVGQLVIRNTSLPAAVKTE
GPWTDMGGFSWKSARFAEYANTGPGAGTGANRPQLGPDRAAAHTARAYLAGTDDWNPTH
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcttccccccaccgccgccccaccggacgtcgaaggctcgccctgaccggagcg
gccaccctggtcgccgccggcctcggcgccgtgccgctcgtcgtgaaggccgatgccgtg
gcaccctccgacctcgcccacggcgtgctgcccgcccgggacggctgggccgcgagcggc
tcgggcaccaccggcggccgtgccgcggacgcagctcacgtcttcacggtctccacccgc
gccgagctggtgagagccctggccgcgggcccggccggcgccccgcggatcgtccgggtc
aagggcctgatcgacgccggcaccgacgacagcgggaagccgcagagctgcgccgaccac
gccgcaggcaccggctactcgctcgactcctacctcaaggcctacgatcccgccgtctgg
ggccgtgccaaggtgccgtccggcgcccaggaggacgcccgcagggcggcccaggccagg
caggccgcccgcatggtgttcaccgtgccggcccgtaccacggtcatcggagtgcccggc
accggagcgggcatcaccggcggcagcctcgtggtgaagaacgccgacaacgtgatcatc
cgcaacctgtcgctcaccgatgtgcgggactgcttcccgcagtgggacccgaccgacggc
tccaccggcaactggaactccgcctacgacgccgtcagcctgcgcggcgccacccatgtc
tgggtcgaccacaacagcttctccgacgacccgcacccggactccgccaacccggtccgc
ttcggacgtgagtaccaggtccatgacggcgccctcgacatcaccaacgcctccgacctg
gtcaccgtcggatacaacacgttcagcaaccacgacaagaccatgctgatcggcagcagc
gacaaggacaccaaactgcgggtgacgctccaccacaacgtcttccggggcatcgtccag
cgcgccccgctcgcccgcgtgggccagatccacctgtacgacaactactacgacaccacg
gcgtcggagggctacgcgcacagctacagcgtcaactcccgcgccggcgcccaggtcgtc
gcggagaacaactactggaagctctcctccgaccggaagacctcccagctgctcagcggc
gacggcaccggagccatcgcgggcagcggcaacctcgtgggcggcgccccggtggacctg
gtcgccgcccacaactccgccgaccccgggaagaagatcaagaccaccgtcgactggcgg
cccaccctcaccgccggactggagcccgccgccggactgccggccaagctggctgcgaag
gcgggcgccggagtcctcaccgagaccggcgccaaggcggcacccgccccctccggtccg
gtcggcggccgtacgctgacggtcgccgccgacggctccgcggcccaccgctccgtgcag
gccgccgtcgacgccgccaccgcgggcgacaccgtcctcgtctcgcgcggcccctaccgg
gagacggtgaacgtccccgcctccaagcacggactgaccctcaagggcgccaccggcaat
gccgaggacgtcgtcatcacctacgacaacgcctccggcacgccgaagcccggaggcggt
acgtacggaaccgcaggcagcgccaccgcgaccttctcggcgaacgacatcaccgtcaca
ggcgtgacggtcgagaacacgtgggagcggtcggctcaccccgacgtcagggacacgcag
gccgtggcggtcaacgcgtccggcgaccggcagaagtacctcgactcgcgtttcatcggc
caccaggacaccgttctcaactgggctcccgccgccaccggccagtaccggcagtacttc
cgtcactgcttcatcgcgggtgacgtcgacttcgtcttcggcaacgccaccgccgtctac
gaccacgtcaacatcactctgcgcgaccggggcgccgcggccggcggaccggccggatac
ctcgccgcgccgaacaccgacgcggccaagccgtacgggatcctcatcaccgacagcacg
atcagcagccccgcccggcccgggacctactacctcggccgtccctggcacccgggcgcg
agcgcggtcggtcagctggtcatccgcaacacgagcctgcccgcagccgtgaagaccgag
ggaccgtggaccgacatggggggcttctcctggaagtccgcccggttcgccgagtacgcc
aacacgggccccggcgccggaaccggagcgaaccggccccagctcggccccgaccgggcc
gcagcccacaccgcccgcgcctacctggccggcaccgacgactggaacccgacgcactga
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