Salvelinus namaycush (lake trout): 120023535
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Entry
120023535 CDS
T07522
Name
(RefSeq) probable E3 ubiquitin-protein ligase IRF2BPL
KO
K22383
interferon regulatory factor 2-binding protein
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120023535
04121 Ubiquitin system [BR:
snh04121
]
120023535
Transcription factors [BR:
snh03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
120023535
Ubiquitin system [BR:
snh04121
]
Ubiquitin ligases (E3)
Atypical E3
120023535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-2BP1_2
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
120023535
NCBI-ProteinID:
XP_038823492
UniProt:
A0A8U0PFR0
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All DBs
Position
Sna28:12498989..12501843
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AA seq
669 aa
AA seq
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MSSAHVSSSRRQSCYLCDLPRMPWAMIWDFTEAVCRGCVNYEGADRIEFVIETARHLKRA
HGFQEGRSPGPLPPPTVKTQAAISAKETVQINHVDGPSKQQQQSGMDRYSLNAERPRFDY
SSIGAHASRLPNGMSGPNGFPKPDDGPPELNRQSPNSRRSHGLVAVPGQMNVPPNLLPQT
MLNGPSSATAIASHSLSSRPPPSIVGSSLSTSSQSMSEQGKRPGSVSSTDQERDLKEKQR
NAEALAELSESLRNRNEDWTNKPKIVRDTLLTLSNSSPFDVRFKKDHSLVGRVFAFDAVS
KPGMDYELKIFIEYPSGSGNVFSSASGVAKQMYQDCMKDFGRGLSSGFKYLEYEKKHGSG
DWRLLGDLLPESVRFFKEGLGVEMLPQPYIDASCPLLPTALVNIPRGLPSASAPRIGVRK
RKASPEPDSAESALKLSEQEQQRQQWMASQSEALKLTMASGSFGTSHGAPPPLGPGHSVH
SSRATPPESTPQNGQSPMAALMSVADTLGNAHSPKDNNSVHSTTSTRHNSSSPVSPASVS
GQRRLASRNGDLNLSGGPSQSNAHSGMDQVHAQNIPDSPMANNGPLCCTICHERLEDTHF
VQCPSVPNHKFCFPCSRESIKAQGATGEVYCPSGEKCPLVGSNVPWAFMQGEIATILAGD
VKVKKERDP
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgcacacgtatcttcatctcggagacagtcatgttacctgtgcgatttaccc
cgtatgccgtgggctatgatttgggattttacggaggcagtgtgcaggggttgtgtgaat
tatgaaggtgcagatcggatcgagtttgttatcgaaactgcacgccacctcaaacgagct
catggtttccaagaggggagatcccccggtccactgccgccgcccacagtcaaaacccag
gcggcaatatcagccaaggagacggtgcaaatcaaccatgtggacggaccatctaaacaa
caacaacagtcggggatggaccgctactctctgaacgcagagagacctcgctttgactac
tccagtattggcgcccatgccagcagacttcccaatggaatgagcggtccaaatgggttc
ccaaaaccggacgatggtcccccagagttgaaccgacagagcccgaactcccgtcggagc
catggtctagttgcggtcccaggacaaatgaatgtcccccccaaccttctcccacagacc
atgttgaatggaccctcctcggcaacagccatagcctcgcatagcctgtctagccgcccc
cctccatccattgtgggatcctctttgtccacgtcctctcagtccatgtcagaacaaggt
aaacgaccaggttctgtgtcaagcactgaccaagagagagatctgaaagagaaacagcgt
aatgcggaggctttggctgagcttagtgaaagtttaagaaacagaaacgaagactggaca
aacaaaccgaaaatagtaagggacacgttgcttactctttcaaacagctccccgtttgat
gtgaggtttaaaaaggatcattcactcgtgggcagggtgtttgctttcgatgcagtgtca
aagcctggcatggactatgaattgaaaatatttatcgagtacccaagtggatctggtaat
gtattttccagcgcatcgggggtggccaaacaaatgtatcaggactgcatgaaggacttt
ggcagagggctctcctcgggttttaaatatttggagtatgagaaaaagcatggctctggg
gactggcgactcctgggtgatttgttgcccgagtcggtccgattctttaaagaggggctg
ggggttgaaatgttgccacagccctacattgatgccagctgtccattgctgcccactgct
ttggtaaacatccctcgtggcttgccatctgcgagtgccccgaggattggcgtgcgtaag
cgtaaagcctccccagaacctgactctgcagagagcgcgctaaaactatctgaacaggaa
caacagaggcagcagtggatggccagccagagcgaggcgttaaaactgacgatggcatcc
ggatcattcggtacctcacacggggcacccccaccgctcggccctggtcattctgttcac
tcaagtcgcgctacgccccctgaatcaacgccccagaatggacagtctccaatggcggcg
ctcatgtctgtcgcggacacgttgggcaatgcgcactccccgaaggacaacaactcagtt
cactccaccacatccaccaggcataacagcagcagcccggtctcgcccgcctctgtttcg
gggcagaggcgtttggcttcccgtaacggagatctcaatctatccgggggtccctcccag
tccaatgcgcattctggcatggatcaggtccacgcgcaaaacattccagattcgcccatg
gcaaacaacggacctctgtgttgtaccatttgccacgaacgtttagaggatacccatttc
gttcagtgtccgtcagttcccaaccataaattctgtttcccttgttctcgagagagcatc
aaagcgcagggagcaactggcgaggtgtattgtcctagcggagagaaatgccccctggta
ggttctaatgtgccttgggcgttcatgcaaggtgagatagcaacaatattagctggggac
gttaaggtaaaaaaggagagggacccatag
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