Salvelinus namaycush (lake trout): 120025088
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Entry
120025088 CDS
T07522
Symbol
cngb1a
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-1
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
120025088 (cngb1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
snh04040
]
120025088 (cngb1a)
Ion channels [BR:
snh04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
120025088 (cngb1a)
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Motif
Pfam:
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
120025088
NCBI-ProteinID:
XP_038825450
UniProt:
A0A8U0PI60
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Position
Sna30:complement(28924192..28934018)
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AA seq
730 aa
AA seq
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MEGGRNIPQIITSQDPLSISLTVSLAPVTKHSGSLLPVEERSAEDDDVFGVDDLEMQTGL
LTVEDEDRPASAASYGSVIVHERVTTLVKLFKARTVRKREKLMDPDDSEEDSPQTTPAKA
PPPPPPPEEDKDISAPVEEEEVEEYWDFYGYPIKILKLPKMPPLPSWLQTIVDFRFPSSI
DPYTDLVYVVWLFFVMMAWNWNVWLIPVRWAFPYQTADNIYWWLFMDYTCDLIYITDILV
FQPRLEFVRGGDIVCDKKDMRDNYMTTERFKMDCISMFPMEIFYYFTGVNSLLRFPRLLK
YMAFFEFNDRLEAVMKKAYIYRVILTTSYLLYSLHINACLFYWGSDYEGLGSTKWVYNGK
GNSYIRCYYFAVKTLITIGGLPDPTTVFEITFQLVNYFVGVFAFSIMIGQMRDVVGAATA
GQNYYRACMDNTIKYMTSYHIPTEVQNRVKTWYDYTWQIQGMLDEQELLIQLPDKMRMDM
AVDVNYSIVSKVALFQGCDRQMIFDMLMRLKSVVYLPGDFVCKKGEIGREMYIIKQGEVQ
VVGGPDLKTVFVTIRAGSVFGEISLLAGGGGNRRTANVMAHGFANLFILDKRDLSDILVH
YPESQKLLRKKAKKMLTKDKKPEEKAEAKETAEVIPDRPETPKLFKAALVVTEQAGIKGT
FAKLKEGYKPAETGSSGLPIPPPSLMVHRRSPIPPTDARVEDDEDAVSETTDSMMLIRMT
RRHKGEELLY
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atggaagggggtcgcaacatcccccagatcatcacctcccaggaccccctgtccatctct
ctgaccgtgtctctcgcccccgtgaccaagcacagtggctcgctcctcccggtggaagag
agaagtgctgaagatgatgatgtttttggtgttgatgacttagagatgcagaccggcctc
ctgactgtggaagatgaggatcgtccagcatcagcggccagctatggcagtgtgattgtc
catgagagagtgactacactggtcaagctgtttaaggcgaggacggtccgcaagagggaa
aaactgatggaccctgacgactctgaggaagacagccctcaaaccaccccagccaaggca
ccccctccccctcctcccccagaagaggacaaggacatctcagccccggtggaggaggaa
gaggtggaggagtactgggacttctatggatacccgatcaaaatcctcaaacttcccaaa
atgcccccacttcctagttggcttcaaaccatagtggactttcgtttcccttccagcatc
gacccttatactgacctggtctacgtggtgtggctgttctttgtgatgatggcatggaac
tggaacgtgtggctgatcccggtgcgctgggccttcccctaccagactgcagacaacatc
tactggtggctgtttatggactacacctgtgaccttatctacatcaccgacatcctggtc
tttcagccccgcctggagtttgtacgcggaggagatattgtgtgtgacaaaaaggacatg
agagacaactacatgacaacagaacgattcaagatggattgtatcagtatgttccccatg
gagatattttactactttactggagttaactcgctcctcagattcccccgcctactgaag
tacatggctttctttgagttcaacgaccgtttggaagcagtaatgaagaaagcctacatc
tacagagtgatcctgaccacttcctacctgttgtattctctccacatcaacgcctgtctg
ttctattggggttctgactacgaggggctcgggtccactaagtgggtctacaacggcaaa
gggaacagttatatccggtgttactactttgctgtgaagaccctgatcaccatcggtggt
ctcccggacccaaccaccgtgttcgagatcacattccagctagtcaactattttgttggc
gtctttgctttctccatcatgattggtcagatgagagatgtggtgggggctgccacagcg
ggacagaactactaccgggcctgtatggacaacaccatcaagtacatgacctcctaccac
atccccacagaggtccagaaccgagtcaagacctggtacgactacacctggcaaatacag
ggcatgctggatgagcaggagctgttgatccagctgccagataagatgaggatggacatg
gctgtggatgttaactactccattgtgagtaaagtggccctgttccagggctgtgacaga
cagatgatctttgacatgttgatgaggctcaagtctgtggtctacctgcctggggacttt
gtctgtaaaaagggtgagatcggcagggagatgtatatcatcaagcagggggaggttcag
gtggtgggaggacctgatttgaagactgtgtttgtgacaatcagggccggctctgtgttt
ggagaaatcagcttgctggcagggggcggggggaacagacgcacggccaatgtgatggct
cacggattcgctaacctcttcatcctggataagagggacctctcagacatcctggtgcac
taccccgagtcccagaaactcctccgcaagaaggccaagaaaatgctgacgaaggataag
aagccagaggaaaaggcagaggcgaaggagactgccgaggtgatcccagacaggccagag
acccccaagctgttcaaagcagccctggtggttacagagcaggcaggcattaagggcacc
ttcgccaagctgaaagagggctacaaacctgccgagactgggtcctctggactccccata
cctcctccctccctgatggtgcaccgtcgctcccccatcccccctacagatgcccgggtc
gaggatgacgaagatgcggtttccgagacgaccgacagcatgatgctcatccgcatgaca
cgccgtcacaaaggcgaggagctcctatactag
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