Salvelinus namaycush (lake trout): 120025695
Help
Entry
120025695 CDS
T07522
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120025695 (chd1)
03036 Chromosome and associated proteins [BR:
snh03036
]
120025695 (chd1)
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
120025695 (chd1)
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
120025695 (chd1)
SLIK complex
120025695 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
HDA2-3
DEAD
CHDCT2
Motif
Other DBs
NCBI-GeneID:
120025695
NCBI-ProteinID:
XP_038826193
UniProt:
A0A8U0PKG0
LinkDB
All DBs
Position
Sna31:5326459..5362039
Genome browser
AA seq
1808 aa
AA seq
DB search
MAGRSEDEGVSNSSGESSNSDDESGSGSGSGSSSSSSSSSSSGSGSGSGSDSGSQSDSDS
GKSKEKNEPENKAKIDGAEFWKSNPSILAVQRSAMLRKQQLQQQQQQSSSNSGSDSSSSE
DSDDDSSGKRRKSGSGSSSGSGSGSGSGSGSDSSAQEQEHSEESDDYEPSHKVKSRKLPT
KANARNGKKSNVQRKKASAGSSSDDDYDGKKSSSNQGPRRQATQNVSYKEDEEQKTDSDD
LVEVCGEDVPPPDEDEFETLERVMETRIGRRGATGGTTTVYAVEADGDPNANFNTNKEAG
EQQYLFKWKGWSHIHNTWETEETLKLQNVKGMKKLDNFKKKESDKKKWIKCSSPEDVEYF
NCQQELMDDLHSQYQLVERIIGHSNQKSAAGFPDYLCKWQGLSYSECSWEDGALISRKYQ
KSIDDYMRRNQSKTIPSRDCKVLKQRPRFIPMKKQPSYIGGEGLQLRDYQLDSLNWMAHS
WCKGNSCILADEMGLGKTIQTISFLNYQFHEHQLYGPFLLVVPLSTLVSWQREIQLWAPL
MNVVVYLGDISSRGMIRTHEWMHVQNKRLKFNILLTTYEILLKDKGFLGNVPWAFIGVDE
AHRLKNDDSLLYKTMMDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFHSWEIFEEEH
GKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAIQKQYYKWILTRNYK
ALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPEDSEFYNKQEALQHLIRSSGKLVLLDK
LLLRLRERGHRVLIFSQMVRMLDILAEYLKSRQFLFQRLDGSIKGEMRKQALDHFNAEGS
EDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKRQVNIYRLVTK
SSVEEEIIERAKKKMVLDHLVIQRMDTTGKTVLHTGTAPSSATPFNKEELSAILKFGAEE
LFKEQEGEEQEPQDMDIDDILKRAETRDNDPGPSTVGEELLSQFKVANFSMMEEEEIVMD
SERHHRGWDDIIPEEQRRRMEEEERQKELEEIYLLPRMRNCAKQVNFNGSESRRSRNRRY
SGSDSDSVSDRKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDA
ELVDKSEHDLKRLAETVHNGCLKTLRENPCGPEKTSGGRRGKVKGPTFRISGVQVNAKLV
ISHEEELAPLHKAIPADPDERKRYTIPCHSKAAHFDIDWGKEDDSSLLIGIYEYGYGSWE
MIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKKEAQRQAGTANWRKR
KPRSKKTKAVKPAKVDEVVKSPSSTPHSDKSSEDEIEEEKEVVPVKLPPRRGRAERVVVK
EEPEPEEEPEPPEEKEPKEREMKKEVKKEKKEESREVKEKDLKEKKETKPVDPVHEQEEV
TGEKPSEVKTEVREKVKKTSDTPVHITAGGENISEESEELDQKTFSVCKERMRPVKAALK
QLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYSNPEQIKQWRKNLWIFVSKFTEFD
ARKLHKLYKHAIKKRQENAQAADGITSTVNTHGFKHADIERLKDNSHHDDSSRDSYSSER
HHSSSRYHEDRDSRDRHTSDPYSRMSGSGGDSRKRPYSSFSNGKDHRDHYRSDRQDSSLA
HSVLFIRYYSDSKHRKVDEHRSGRDGRMDSKERSHSDHRSHSEHHSGSDYSSGHHKSSSR
GDSYRYHADWQMDQRASASGPRSPRDQRSPRDQRSPYDGRSPLGHRSPFEYSSDHKSTPE
QIWSSRKT
NT seq
5427 nt
NT seq
+upstream
nt +downstream
nt
atggctggacgaagtgaagacgagggtgtgagcaacagcagtggagagtcaagcaactcg
gacgatgagtccgggtcgggctctggatcaggctccagctccagttccagctccagtagc
agctcaggaagtggctcaggaagcggctcagactccggcagccagtccgattccgactct
gggaaatccaaggagaagaacgaaccagaaaacaaagccaagatcgacggagccgagttc
tggaagtccaaccccagtatcctagcagttcaaaggtcagctatgctcaggaaacagcaa
ctccagcagcaacaacaacagagctcttcaaacagtggatcggattcgtcgagcagtgag
gattcagatgacgactcgagtggaaagagaagaaaatcgggttctggatcgtcctccggg
tctgggtcgggttctggaagtggttccggttctgactcgtcagcacaggaacaggagcac
agtgaagagtcggatgattacgagcccagtcataaagtcaaaagcaggaagcttccaacc
aaggccaacgccagaaacgggaagaagagcaatgtgcagaggaaaaaggcctctgcgggc
tcatcctcggacgacgactacgacggcaagaagtcgtcgtcgaaccaggggcccaggcgc
caggccacgcagaacgtcagctacaaggaggacgaggagcagaagactgactctgacgac
ctggtggaggtgtgcggggaggatgtgcctccgccagacgaggatgagtttgagaccctg
gagcgcgtgatggagacgcggatagggaggagaggagcgacgggaggcaccaccacagtg
tacgcagtggaggcggacggagaccccaacgccaacttcaacaccaacaaggaggcgggc
gagcagcagtacctgttcaagtggaaaggctggtcccatatccacaacacctgggagacg
gaggagacgctgaagctgcagaacgttaagggcatgaagaaactagacaacttcaagaag
aaggaatcggacaagaagaaatggataaaatgttcttcaccagaggatgtggaatacttc
aactgtcaacaggaactcatggacgacttacactcacaatatcagctggtggagaggata
attgggcattcaaatcagaagtcggcggcgggttttccggactacctgtgcaagtggcag
ggcctgtcgtactccgagtgcagctgggaggacggagccctcatctccagaaagtaccag
aagagcatagatgactatatgcgcagaaaccagtccaagaccattccctccagagactgc
aaggtgttgaaacagaggccgaggtttattcccatgaagaaacagccgtcctatatcggt
ggagaaggactgcagctccgagactaccagttggacagcttgaactggatggctcactca
tggtgcaaggggaacagttgcatcctggcagacgagatgggcctgggaaaaaccatccag
accatctccttcctcaactaccagttccatgaacaccagctgtatggaccattcctgctg
gtggtgcccctttccacgctcgtctcctggcagagagagatccaactgtgggcccccctc
atgaacgtggtggtctacctgggtgacattagcagccggggcatgatcagaacacatgaa
tggatgcacgttcagaacaagagactcaagtttaacatcctgctaacaacatatgaaatt
ctcctaaaagataagggattcctggggaacgtgccatgggcctttatcggcgtggatgag
gcccaccggctgaagaacgacgactcgctcctttataagaccatgatggacttcaagtcc
aaccaccggctgctcatcaccggcacgccgctgcagaactcactcaaagagctctggtca
ctgctgcacttcatcatgcccgaaaagttccactcgtgggagatatttgaggaggaacat
gggaagggtagggactctggctacaccagtctacacaaggagctggagcccttcctgctg
cgtagagtcaagaaggatgtggagaagtctcttcctgctaaagtggagcagatcctcaga
gtggagatgagcgccattcagaagcagtactacaagtggatcttgacgaggaactacaag
gccctgagtaaaggtaccaaaggtagcacgtctggcttccttaacatcatgatggagctg
aagaagtgctgcaaccactgctatctcatcaagccccccgaggacagcgagttctacaac
aaacaggaggccttacagcacctaatccggagcagcgggaagctggtgctgctggacaag
ctgctgctgcgtctgcgggagcgtggccaccgtgtgctcatcttctctcagatggtccgg
atgctggacatcctggccgagtacctgaagagccgccagttcctcttccagagattggac
ggctccatcaagggagagatgaggaaacaggcgctggaccatttcaacgctgagggctct
gaggatttctgcttcttgttgtcaacacgggcgggcggtctgggcatcaacctggcgtcg
gccgacacggtggtcatatttgactcggactggaacccacagaatgacctgcaggcccag
gccagagcccacaggattggccagaagagacaggtgaacatctaccgcctggtgactaag
agctcggtggaggaggagatcattgagcgggccaagaagaagatggtgctggaccatcta
gtcatccagaggatggacaccaccgggaagacggttctccacaccggcaccgccccgtcc
agtgccactccgttcaacaaggaggagctgtcggccattttgaagtttggtgccgaggag
ctgttcaaggagcaggagggggaagagcaggagcctcaggatatggacatcgacgatatc
ctgaagagagccgagaccagagacaatgaccccggcccctccactgttggagaggagcta
ctctcacagttcaaggtggccaacttctccatgatggaggaggaggagatcgtcatggat
tctgagcgccaccatcggggctgggacgacatcatccccgaggagcagcggcggcggatg
gaggaggaggagaggcagaaagagctggaggagatctacctgctgccccgcatgaggaac
tgtgccaaacaggtcaactttaacggcagtgagagccggcgtagtagaaacagacggtat
tccggctccgacagcgactccgtctcggatcgcaagaggcccaagaaacgaggacggcct
cggaccattccacgagaaaacatcaagggcttcagcgatgctgagatacgaagatttatc
aagagctacaaaaagtttggtggaccacttgaaagactggatgctatcgcccgtgatgcc
gaactagtggacaagtctgaacatgacctgaagcgtctggcggagacggttcacaacggc
tgtctgaagactctccgggagaacccctgtggaccagagaagacgtcaggaggcagaaga
gggaaagtgaaaggccctacgttcaggatctcgggcgtccaggtgaacgccaagctggtg
atctcccacgaggaggagctggcgccgctccacaaagccattcctgccgaccctgatgag
aggaagaggtacacaattccatgccactccaaggcagcacactttgacattgattggggc
aaggaggacgactctagcctgctcataggaatctacgagtatggttacggcagctgggaa
atgattaaaatggaccctgacctcaacctgacacacaagctcctaccagacgaccctgac
aagaagccacaggccaagcaactgcagacgagagcagactatcttatcaaattactgagc
aaggacctggccaaaaaggaagcacagaggcaagcagggacggccaattggcggaagagg
aaaccgaggagtaagaagaccaaagctgtgaagccagccaaggtggacgaagtggtgaag
agtccgtcctctacgccccactcagacaagtcctcagaggacgagattgaggaggaaaag
gaggtggtcccggtaaagctgccacccagaaggggccgagcggaacgcgtggtggtgaag
gaggagcctgagccagaggaggagccggagccgcctgaggagaaggagcccaaagaaagg
gagatgaagaaagaggttaaaaaggagaagaaagaagagagccgcgaggtgaaagagaag
gacctgaaagagaagaaagaaaccaagcccgtggatccagtacatgaacaggaagaggtc
acaggggagaagccgagcgaggtgaagactgaggtacgggagaaggtgaagaaaacttca
gacactccggtccacatcacagcagggggagagaacatctcggaggagtcggaggaactg
gaccagaagaccttcagtgtgtgtaaggagaggatgcgaccggtcaaggcggccctgaag
cagctggaccgtccggagaagggcctgtcggaacgcgagcagctggagcacacgcgccag
tgcctcatcaagatcggagaccacatcacagagtgtctgaaggagtactccaaccccgag
cagatcaaacagtggagaaaaaacctgtggatatttgtttcaaaatttacagaatttgat
gcaagaaaattgcataaactgtataagcacgcaatcaagaaaagacaagagaatgctcag
gcagcagatgggatcactagcactgtaaatacccatggctttaaacatgcagacatcgag
aggctaaaagacaactctcaccacgacgacagcagcagggacagctacagctctgaaagg
caccactcgtcgtcgcgctaccacgaggaccgcgacagccgggacaggcacacctctgac
ccctacagcaggatgtcggggagcgggggggactccaggaagagaccctactcgtccttc
agcaacggcaaagaccacagagaccactacaggtcagaccggcaggacagcagtcttgct
cacagtgtcctcttcatcagatactacagcgacagtaagcacaggaaggtggacgagcac
cggtcaggccgagacggacggatggacagcaaggagcgctcccactctgaccaccgctcc
cattccgaacaccactcgggctccgactactcatcgggccaccacaagtcgtcatcgcga
ggtgactcttaccgctaccatgcagactggcagatggaccaacgggcatcggccagcggt
ccccgttcgccgcgtgaccaacgctcgccacgcgaccaacgctcgccctacgacggacgc
tcgccattaggccaccggtcgcccttcgagtactcgtcagaccacaagagcacgccagag
cagatctggagcagccgcaagacataa
DBGET
integrated database retrieval system
