Salvelinus namaycush (lake trout): 120027215
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Entry
120027215 CDS
T07522
Symbol
gtf2h4
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03022
Basal transcription factors
snh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120027215 (gtf2h4)
09124 Replication and repair
03420 Nucleotide excision repair
120027215 (gtf2h4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120027215 (gtf2h4)
03400 DNA repair and recombination proteins [BR:
snh03400
]
120027215 (gtf2h4)
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
120027215 (gtf2h4)
DNA repair and recombination proteins [BR:
snh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
120027215 (gtf2h4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
120027215
NCBI-ProteinID:
XP_038828037
UniProt:
A0A8U0PPP4
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Position
Sna32:32645668..32657074
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AA seq
462 aa
AA seq
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MKLRVQLQCKNLHEYLKELSPEILDRLYNHPATCLAVYRELPPLAKNYVMRMLFLDQPLP
QAAVALWVKKDSEKDHDQCVSVLSGLRLWHSQQLQGGLQGNILNPVFKDNLRIALLGGGK
SWADQGDSLGPDRHARDVESLDKYALERWEVVLHFMVGCPSAAVSQDLSQLLIQAGLMRT
EAGDAPCITSAGFQFLLLDTASQLWYFTLQYLNTAQTRGMDLVEILSFLFQLSFSTLGRD
YSVEGMSESLLTFLQHLREFGLVFQRKRKSRRYYPTRLAITLSAGVSANSSSTAMGAAPG
TGDSGFIVVETNYRLYAYTNSELQIALVALFSECLYRFPNVVVAHVTRESVQQAIANGIT
AQQILHFLRTRAHPVMLKQNPVLPPTITDQIRLWELERDRLQFSEGVLYNQFLSQADFEV
LRDRAQSLGCLVWQNVAHRVIVVSPQGHGEVKRFWKRQKSHT
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgcgcgttcagttacaatgcaagaacctccacgagtatctgaaagagttgagc
cctgagatcttagaccgcttgtacaatcatccggccacatgtctggctgtctacagggag
ctccccccattggccaagaattatgtaatgcgaatgctgtttctagaccaaccccttcct
caggctgcggtggctctttgggtgaaaaaagacagtgaaaaggatcatgatcagtgtgtc
tctgtgctgtctggtctcagactatggcacagccagcagctacagggaggcctgcaggga
aacattctgaaccccgtattcaaagacaacctgagaatagcattattaggagggggtaag
tcgtgggcagaccagggtgacagtcttggtcctgacagacatgcccgtgacgtggagagt
ctggataagtatgccttggagcgctgggaggtggttctccacttcatggtgggctgtccc
agtgctgcagtcagccaggacctgtcccagctcctcattcaggctggcctcatgagaact
gaggctggagatgctccctgtatcacctcagctggtttccagttccttctcctggacaca
gcctctcagctctggtacttcaccctacagtacctcaacacggcacagactcgtggaatg
gacctggtggagattctgtccttcttgttccagctcagtttctcaacactaggcagggac
tactcagtggaggggatgagtgaatctctgctcacctttctacagcacctgagagaattt
ggcctcgtcttccagagaaagaggaagtctagaaggtactaccccaccaggctggccatc
accctgtctgctggcgtctccgccaactcttcctccaccgctatgggcgctgccccaggg
actggggattcaggtttcatcgtagtggaaaccaactatcgtctctatgcttatactaac
tctgagctgcagatcgctttggtggctctgtttagtgagtgtctctatcgcttccctaac
gtggtggtagcccatgttaccagggagtcagtacagcaagccatcgctaacggcatcacc
gcacaacagattctccactttctaaggaccagagcacatcctgtcatgctcaaacagaac
ccagtgctgccccccaccatcacagaccagatcagactatgggagctggagagagatcga
ctacagttctctgagggagtgctgtataaccagttcctctcccaggctgacttcgaggtg
ttgcgggacagagctcagagcctgggctgtctggtgtggcagaacgtggctcacagggtg
attgtggtttcaccgcagggacacggcgaagtcaagaggttctggaaacgacagaagagt
cacacttga
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