Salvelinus namaycush (lake trout): 120031398
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Entry
120031398 CDS
T07522
Symbol
vps11
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04140
Autophagy - animal
snh04148
Efferocytosis
snh05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
120031398 (vps11)
04148 Efferocytosis
120031398 (vps11)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
120031398 (vps11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
snh04131
]
120031398 (vps11)
Membrane trafficking [BR:
snh04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
120031398 (vps11)
Hops complex
120031398 (vps11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
VPS11_C
zf-C3HC4_2
zf-rbx1
zf-RING_2
zf-C3H2C3
zf-C3HC4
zf-ANAPC11
zf-RING_5
zf-RING-like
DUF6543
Kbp-5
Motif
Other DBs
NCBI-GeneID:
120031398
NCBI-ProteinID:
XP_038833061
UniProt:
A0A8U0PXR1
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Position
Sna3:41238646..41265332
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AA seq
929 aa
AA seq
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MAAFLQWRRFVFFDKETVKDAGDNGKNFVLPVGISACDSGRGHIVLGDMDGQIWFLTRSL
QLSSFQAYKLRVTHLYQLKQHSILVTVGQDEQGINPLVKVWNLDKRDSGNPLCTRIFPAI
PGNKPTEVSCLSVHENLNFMAIGFTDGSVVLTKGDITRDRHSKTLTLHEGTCPITGLAFR
QQCKVTHLFVATLEKVHCYTLSVKEYPKLELDTHGCALRCSALTDPSQDSQFIVAGDECV
YLYQPDERGPCFAFDGHKLLAHWHRGYLLLLTRDTKSPNKSEFGSRETSPSEKQILTIYD
LDNKFIAYSASFDDIIDVLAEWGSFYILTRDGKMFVLQEKDTQTKLEMLFKKNLFVMAIN
LAKSQHLDSDGLSEIFRQYGDHLYVKGDHDGAIQQYIRTIRKLEPSYVIRKFLDAQRIHN
LTAYLQALHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKSSESEVHFDVEIAIKVLRQA
GYHSHAVFLAERHQHHKWYLKIQLEDLKNYQEALRYIGRLPFDQAESNMKRYGKTLMHHV
PDGTTLLLKGLCTDYQPSRDAMERDSLDRGPAVAKKANSEEFISVFANNPRELRAFLEHM
IEVEPFSSQGVYDTLLELRLQDWAHEQDSERKKVLQGAALSLLRSDNTVFDKALVLCQMH
NFKEGVLYLYEKGKLYQQIMHYHMQNEEYGKVVEACKRYGDQEVCLWEQALGYFARKEED
CKAYISQVLEHIDQNNLMPPLLVVQTLAHNSTATLSVIKDYLINKLQRESQQIEDDERKI
RQYREETAHLRAEIQELRSSAKIFQKTKCSMCNSPLELPSVHFLCSHSFHQHCFESYAES
EAECPTCTPENRKVMDMLRAQDQKRDLHDHFTRQLRCSNDGFSVVADYFGRGVFNKLTLV
TDPPGSKVGAGSLEADLQRDLLIHTKRNT
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgttcttacagtggagacgatttgtgttttttgataaagagaccgtgaaggac
gctggagataatgggaagaacttcgtcctccccgttggcatatctgcatgtgactcgggc
cggggtcacatcgttcttggagatatggacggtcagatctggtttttgacacgctcccta
cagttgtcctcctttcaggcttacaaactgagagtgacccacctataccagctcaagcag
cacagcattttggtcacggttgggcaggacgagcaaggaattaaccccctggtgaaggta
tggaatctggacaagcgtgacagcgggaatcctctgtgtaccagaatattcccagcaatt
cctgggaacaaaccaacagaggtgtcctgcctcagtgtacacgagaacctaaactttatg
gccattggcttcacagatggcagtgtggtgttgacaaagggtgacataacccgggacagg
cacagtaaaaccctgacactgcatgagggcacctgtccaatcacgggcctcgctttccgt
cagcagtgcaaagtcactcacttatttgttgccactctggaaaaagtccactgctacact
ttgtcggtgaaggagtaccctaaactggaactggacacccacggctgtgcgctgcgttgc
tctgcgctcacagacccctcccaggactcccagtttattgtcgcgggggacgagtgtgtg
tacctttaccagcctgatgaacgtgggccctgtttcgctttcgacgggcacaagctactg
gcccactggcaccggggctacctcctgctgctcaccagggacaccaagtctcccaacaag
tctgaatttgggagtagagagacatctccttcggagaaacaaatcttgacaatctacgac
ctggacaacaagttcattgcctacagcgcttcctttgatgacatcatcgacgttctggcc
gaatggggctccttctacatcctgactcgggatggaaagatgtttgtgctgcaggagaaa
gacactcagaccaagctagagatgctcttcaagaagaatctgtttgtgatggccatcaac
ctggctaagagccagcacttggacagtgacgggctgtctgagatcttcaggcagtacggt
gaccacctttacgtgaagggggaccacgatggagccatccaacagtacatccgcacaatc
aggaagctggagccctcttacgtaatccggaagtttctggatgctcagaggatccacaac
ctgacggcctacctccaggccctgcaccggcagtcgctggccaatgccgaccacaccacc
ctgctgctcaactgctacaccaagctcaaggacagctctaagcttgaagagttcatcaag
agcagcgagagcgaggtccacttcgacgtggagattgccatcaaggtgctgcgccaggca
ggctaccacagtcacgcagtcttcctggccgagaggcaccagcaccacaagtggtacctg
aagatccagcttgaggacctgaagaactaccaggaggctttgcgctacattggacgactt
cctttcgaccaggcagagagcaacatgaaacgctacggcaagaccttgatgcaccatgtc
cccgacggcaccacactgcttctcaagggcctgtgtaccgactaccagcccagccgggat
gccatggaaagagacagtctggacagaggcccggcggtggccaagaaggcaaattcagag
gagttcatctctgtgtttgctaataacccgcgggagctaagggccttcctggagcacatg
attgaggtggagcccttctcctctcagggagtgtatgacacactgctagaactacggctg
caggactgggcacatgaacaagactctgagaggaagaaggtcctgcagggggcagcacta
tccttgctgaggagcgacaacaccgtatttgacaaggccctcgttctgtgccagatgcac
aacttcaaagaaggggtcctgtacctctatgagaagggcaaactgtaccagcagatcatg
cactaccacatgcagaatgaggagtatggcaaagtggtagaggcctgcaagcgctacggc
gaccaggaagtatgcttgtgggagcaggcgctgggatactttgcccgcaaagaggaggac
tgcaaggcctacatcagccaagtcctggagcacattgaccagaacaacctgatgcctccc
ctattggtggtgcagacgctggcacacaactccacagccacgctgtcggtcatcaaagac
tacctgatcaacaagctgcagagggagagccagcagattgaggacgatgagcgcaagatc
cgccagtaccgtgaggagacggcccacctccgcgccgagatccaggaactcagaagcagc
gcaaagattttccagaagaccaagtgcagcatgtgcaacagccccctcgagctgccctct
gttcactttctgtgcagtcactccttccaccagcactgctttgagagctacgccgagagt
gaggccgagtgtcccacctgcacaccggaaaaccggaaggtcatggacatgctgcgggcc
caggaccagaaacgagacctgcatgaccacttcaccagacagctgcggtgctccaatgat
ggtttctccgtggtggcggactactttggccgtggggtgttcaacaagctaaccctggtc
accgacccgccgggcagcaaggtgggggcgggaagcctggaggcagacctgcagagggac
ctactcatccacaccaagaggaacacttga
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