Salvelinus namaycush (lake trout): 120038071
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Entry
120038071 CDS
T07522
Name
(RefSeq) transcription factor Sox-8-like
KO
K09270
transcription factor SOX7/8/10/18 (SOX group E/F)
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120038071
Transcription factors [BR:
snh03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
120038071
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
Sox_N
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
120038071
NCBI-ProteinID:
XP_038839943
UniProt:
A0A8U0U512
LinkDB
All DBs
Position
Unknown
AA seq
469 aa
AA seq
DB search
MLKMTAEHDKSISDPPCSPAGTTSSMSQDDSDSDAPSSPTGSDGHGSLLAGIGKKLDGED
DDRFPACIRDAVSQVLKGYDWSLVPMPVRGNGSLKNKPHVKRPMNAFMVWAQAARRKLAD
QYPHLHNAELSKTLGKLWRLLSENEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKPG
QSDSDSGAELGNHMYKAEPGLLAGLADGHHHPEHAGQPHGPPTPPTTPKTDLHHGGKQDM
KHEGRRLLDSGRQNIDFSNVDISELSTDVISNMEAFDVHEFDQYLPLNGHASTAGAGVDH
HGHHGPNPASGAGSYTSYSHATANGAVWSRKSATMSASSSTSSEAVPQHRAHIKTEQLSP
SHYSGDSHSHSSPSHSDYSHSYTAQTCVTSSAAAASFSSSQCDYTDLQSSNYYNPYSGYP
SSLYQYPYFHSSRRAYHGSPILNSLSIPPTHSPPTSNWDQPVYTTLSRP
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaaatgaccgcagagcatgacaagtccatcagcgacccaccgtgtagcccggcg
gggactacgagctccatgtcgcaggatgattccgactcggatgcgccctcgtcgccaacg
ggatcagatggacacggatcactcctcgctggtataggaaagaaactggacggcgaggat
gatgaccgattcccagcctgcatacgtgacgcggtgtcgcaggttctcaagggatacgac
tggtccctcgtccccatgcccgttcgaggaaatggctcgctgaaaaataaaccccatgtc
aaaagaccgatgaacgcgttcatggtgtgggcgcaagcggcgcgcagaaagctcgcggac
caataccctcatctgcacaatgccgaactgagcaagactttggggaaactatggcgctta
ctctcagagaatgagaagcggccatttgtggaggaagcggagagacttcgggtgcagcac
aaaaaagaccatcccgactacaagtaccagcctcggcgtcggaagagtgtgaaacctggg
cagagtgactccgactctggtgcagagctggggaatcacatgtacaaggctgaaccagga
ttgttggcaggcctagccgatggacaccaccaccctgaacatgcaggccaaccccacggt
ccacccacaccccccaccacccccaaaacggacctgcaccacgggggcaaacaggacatg
aagcacgagggacggcgcctgctggacagcggccgacagaacatcgatttcagcaacgtg
gacatctccgagctcagcaccgacgtcatcagcaacatggaggccttcgacgtgcatgag
tttgaccagtatctaccgctcaacggccatgcctccaccgctggtgcaggcgtggaccac
cacggccaccatggaccaaaccctgcatctggtgccggctcgtatacatcatacagccac
gccacagcgaacggtgccgtttggagccgcaagagtgccaccatgtctgcttcttcctca
acttctagtgaggcggtcccacagcaccgggcccacatcaagacggagcagctgagcccc
agccactacagcggcgacagtcactctcacagctccccctcccactcagattactcccac
tcctacacagcccagacctgcgtgacgtcatccgcagctgcagcttccttctccagttct
cagtgtgactatacagacctccagagctccaactattacaacccctactcaggctaccct
tccagcctgtaccagtacccttactttcactcctccagaagggcgtaccacgggagcccc
atcctcaacagtttgtccattccccccacccacagtccccccacctccaactgggaccag
ccggtgtacaccaccctatccagaccgtag
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