Salvelinus namaycush (lake trout): 120055805
Help
Entry
120055805 CDS
T07522
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03013
Nucleocytoplasmic transport
snh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120055805
03015 mRNA surveillance pathway
120055805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120055805
Enzymes [BR:
snh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120055805
5.6.2.5 RNA 5'-3' helicase
120055805
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120055805
mRNA cycle factors
Common to processing body (P body) and stress granule
120055805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
UvrD_C_2
SRP54
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
120055805
NCBI-ProteinID:
XP_038859711
UniProt:
A0A8U1EUF9
LinkDB
All DBs
Position
Sna11:10896423..10907568
Genome browser
AA seq
1102 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEADLLGADTQGSEYEFTDFTLPSQTQTGQTQSQLDNQVNGP
DGVLQNGEDSVVKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKK
WFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKAD
SVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQI
NKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKE
SQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATVVYHLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLCAKSREAIDSPVSFLAL
HNQIRNMDSIPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLTNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
AVNPGGRFMSTAMYDAREALIPGSVYDRSSTARTSNMYFQTHDQIGMIGPGPMASLNIPI
PFNLVMPPMPPPGYLGQVNGPQAGRGCGMKGKAGGGARGGRQRSRGMASHGGGNGQHGHM
SGSQASQDLGSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVAL
SQDSTYQGERAYQHGVTGLSQY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgaggcgtacgggccgagctcgcagactctcacgttcctggacaccgaggaa
gcagacttgcttggagcagatacccagggttcggaatatgagttcacagattttacccta
ccgagccagactcaaacaggccagactcagagtcagttggacaaccaggtgaatgggcct
gatggagttctgcagaatggggaagactctgttgtaaaagcaagtcaactccttgcagag
ttgaactttgaagaagacgaggaggacacctattatactaaagacctcccagtccatgca
tgcagttactgtggcattcacgatccggcatgcgtggtgtattgcaacaccagcaagaag
tggttttgcaatggacgcggcaatacgtctggcagtcacattgtgaaccacctggtcaga
gcaaagtccaaggaggtgactctgcacaaggacggtcctctgggggagacggtgctggag
tgctacaactgtggctgtcgcaacgtcttcctcctggggttcatccccgccaaggcagac
tctgtggtggtattgctttgcaggcagccatgtgccagtcagagcagtctgaaagacatc
aactgggacagctcccagtggcagccgctgatccaggaccgctgcttcctctcctggctg
gtgaagatcccctcggagcaggagcagcttcgggcccgccagatcaccgcccagcagatc
aataagctggaggagctctggaaggaaaaccccacggccactctggaggaccttgagaag
cccggcgtggacgaggagcctcagcacgtgctgctgcgctatgaggatgcctaccagtac
cagaacatatttggccccctggtcaaactggaggccgactacgataagaaactcaaagag
tcccagacccaagacaatataactgtcaggtgggacttgggactcaataaaaagcggatt
gcttatttcagccttcccaagacggactcaggtgacatgcgcctgatgcagggtgatgag
atttgcctgaggtacaagggagatcttgccccactctggaagggtattggacatgtcatc
aaagtcccagacaactatggcgacgagatagccatcgagctgaggagcagtgctggggct
cctgtggaagtaccacataacttccaggttgactttgtgtggaagtccacctcttttgac
aggatgcagagcgccctgaagacctttgccgtggacgagacctctgtgtccgggtacatc
taccacaagctgctgggtcacgaggtggaggatgtggtcatcaagtgtcagctgcccaaa
cgcttcaccgcccagggcctgcctgacctcaaccactcacaggtgtatgctgtgaagacc
gtgctgcagcgtcctctcagtctcatccagggcccccctggcacggggaaaacggtcacc
tctgccactgtagtctaccacctggccagacagggcaacgggccagtgctggtgtgcgct
cccagcaacatcgcggtggaccagctgactgagaagatccacatgtcgggcctgaaggtg
gtgaggctctgtgccaagagcagagaggccatcgactcccctgtgtccttcctggctctg
cacaaccagatccgcaacatggacagtataccagagcttcagaagctgcagcagctgaag
gacgagactggggagctgtcctcctctgatgagaagcgctacagggccctgaagcgcacc
gccgagagggaactactcacgaatgctgatgtgatctgctgtacctgtgtgggagcaggg
gacccccgccttgccaagatgcagttccgctccatcctcattgatgagagcacgcaggcc
actgagcccgagtgcatggtgcctgtcatactgggggccaaacagctgattctggtggga
gaccactgccagctgggtccagtagtgatgtgtaagaaggcagccaaagcgggcctgtcc
cagtccctgtttgagcgtctggtggtgctgggcatcaggcccatccgtctgcaggtgcag
taccgtatgcacccagccctcagcgccttcccctccaacatcttctacgagggctccctg
cagaacggagtcaccgcggctgaccgcatcaagaaaggctttgacttccagtggcctcag
ccagacaaacccatgttcttctatgtgacccagggccaggaggaaatcgcaagctccgga
acctcctatctaaacaggactgaggcttccaacgtggagaagatcaccaccaggctgctc
aaggccggggccaagcctgaccagataggcatcatcaccccctacgagggccagaggtcc
tacctggtgcagtacatgcagttcagtggctctctccacaccaagctctaccaggaggtg
gagatagccagtgtcgatgccttccagggcagagagaaggacttcatcatcctgtcctgt
gtcagagccaacgagcaccagggcatcggcttcctcaacgacccacgacgtctcaacgtg
gctctcaccagggccaggtatggggttatcatcgtgggcaaccccaaggccctgtccaag
cagcctctgtggaaccacctgctcaactactacaaggagcagaaggttctggtggaggga
cccctcaacaacctgagggagagcctcatgcagttcagcaagcctcgcaagctggtcaac
gccgtcaaccctgggggccgtttcatgagcacagccatgtatgatgccagggaagctctt
attcctggatctgtgtatgaccgcagcagcactgcacgtacatccaacatgtacttccag
acccacgaccagattggcatgattggcccaggccccatggcctctttgaacatccccatc
cccttcaacctggtcatgccccccatgcccccgccaggctacctgggccaggtcaacggc
ccccaagcaggccgtggctgcggtatgaagggtaaggcgggcggaggggcacgaggcggg
cgccagaggagccgtggtatggcgagccatggcgggggcaacgggcagcacggccacatg
agtggcagccaggccagccaggacctgggctcccagcccttctcccagggacccctgacc
cagggctacatcaccatgagccagccctcccagatgagccagcctggcctgtcccaacct
gaactctcccaggacagctaccttggcgatgagttcaagtcccagattgacgtggccctc
tcccaagactccacctaccagggtgaacgagcctatcaacatggtgtgactggactgtcc
cagtactag
DBGET
integrated database retrieval system
