Salvelinus namaycush (lake trout): 120055986
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Entry
120055986 CDS
T07522
Name
(RefSeq) THO complex subunit 1-like isoform X1
KO
K12878
THO complex subunit 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03013
Nucleocytoplasmic transport
snh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120055986
09122 Translation
03013 Nucleocytoplasmic transport
120055986
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120055986
03041 Spliceosome [BR:
snh03041
]
120055986
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
120055986
Spliceosome [BR:
snh03041
]
Complex C
Other components
EJC/TREX
120055986
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120055986
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
DUF977
Motif
Other DBs
NCBI-GeneID:
120055986
NCBI-ProteinID:
XP_038860016
UniProt:
A0A8U1BMC1
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Position
Sna11:29764017..29778019
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AA seq
655 aa
AA seq
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MSVLILFNLNDAKNIFTASTRSALVNKTSQPLINAFNQITGNETEKKTTLDQALRQVLEE
QIVEKKALVDDFLSLIYLSIDGVTEGICSATTPFLLLGDVLDCLPLYQCDKVFSFVEENV
STWKSNSFYTAGKNYLLRMYNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQ
FNLNNITVFNKNEKESTLGQKPTEEDGMEVEEGEMGDEEPSAPAPCSIPIDYNLYRKFWT
LQDYFRNPVQCYETFSWMTFLKYSDETLAVFRSFKLDDMQASKRKLEELRTAGGDHVYFA
KFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSSCILNDDQCSWMEETTKV
VYQLLREIAPDGDKFATMVEHVLNTEENWNSWKNEGCPSFVKERPVDDKPKRPMRKRQAP
EDFLGKGPDRKVFMGNDELTRLWNLNHNNMAACQSVSREFMPTLEEFFEEAIEQADPANM
VEDEYKVVRNSNYGWRALRLLSRRSPHFFQPTNQQIKSLADYLESMVIKLAKELPKDLPS
EEIKTGEEDYEDNGDTLLKESNDSLSMQTKLVSNQQMDDIAVKLGSQWKTLAGQLEIKAA
EIREIETDSKDVDMQAKLLLVAWQDREGTQATVESLVPALNAAGFPKIADILNET
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtactgattttattcaatttgaacgatgcaaaaaatatatttacagcctcaacc
agaagtgcgttggtcaacaaaaccagccaacctttgataaacgcattcaaccagatcact
ggaaatgagacagagaagaagaccacccttgaccaagctctgaggcaggtcctggaggag
cagattgtggaaaagaaagcactcgtcgatgacttcctgtctctcatctatctcagcatt
gatggagtcactgaaggtatctgctccgccaccactcctttcctactgttgggagatgtt
ctggactgtcttcctctgtaccagtgtgataaggtcttctcctttgttgaagagaatgtc
tccacctggaagtctaactccttttacactgctgggaagaactacttgttaaggatgtat
aatgatcttttgaggaggttgtccaagtctcagaacacagtcttctgtggacggatccag
ctgttcctggctcgtctctttcccctgtctgagaaatcaggtctgaacctgcagagccag
tttaatctcaacaacatcacagtgttcaacaaaaatgagaaagagagcactcttggccag
aagcccacagaggaggatgggatggaagtggaggagggggagatgggagatgaggaacct
agtgcacctgcgccatgttccatccctatcgactacaacctatacagaaagttctggact
ctgcaggactacttcagaaaccctgttcaatgttatgagacgttttcctggatgactttc
ctcaagtattcagatgagacgctggcagtgtttagaagcttcaagctggacgacatgcag
gcttctaaaaggaagctggaagagctgaggacggcaggaggagaccacgtttactttgcc
aagttccttaccagtgagaagttgatggacctgcagctcagtgacagtaacttcagacga
cacatcctcctgcagtaccttatcctgttccagtacctcaagggacaggtcaagttcaaa
agctccagttgtatcctgaatgatgatcagtgttcatggatggaggagaccaccaaagtt
gtgtaccagctgctcagagagatcgcaccggatggagacaagtttgccaccatggtcgag
catgtcctaaacacagaggagaactggaactcgtggaaaaatgagggatgcccaagcttt
gtgaaggaaagaccagtagatgacaaacccaagagacccatgaggaagagacaagctcca
gaagacttcctaggtaaaggccctgacaggaaggtcttcatggggaatgatgaactcacg
agactgtggaatctgaatcataacaatatggcagcttgccagtcagttagcagggaattc
atgcctactctggaggagttctttgaagaggccattgaacaggctgacccagccaacatg
gtggaagatgagtacaaggtggtgcgtaactcaaactatggctggcgagccctgcgtctg
ttgtctaggaggagtccccacttcttccagcccaccaaccagcagatcaagagcctggct
gactacctggagagcatggtcatcaaactggccaaggagctgccgaaggacctcccgtct
gaggagataaagacaggagaggaagactatgaagacaacggcgacacccttctcaaagag
agcaacgacagtctgagcatgcagaccaaactggtgtctaaccagcagatggatgacata
gcagtcaagctgggttcccaatggaagaccctggctggccagctggagataaaagcagcg
gagatccgggagattgagacagacagcaaggatgtggacatgcaggccaagctgctgctg
gtggcctggcaggaccgtgaggggacacaggccaccgtcgagagcctggttccagcactc
aatgctgctggcttccccaagatcgcagacatcctcaacgagacatag
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