Salvelinus namaycush (lake trout): 120058182
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Entry
120058182 CDS
T07522
Name
(RefSeq) regulator of nonsense transcripts 3A-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03013
Nucleocytoplasmic transport
snh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120058182
03015 mRNA surveillance pathway
120058182
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120058182
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120058182
mRNA cycle factors
P-body specific factors
120058182
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
PagP
RRM_1
Motif
Other DBs
NCBI-GeneID:
120058182
NCBI-ProteinID:
XP_038862592
UniProt:
A0A8U1BZQ8
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Position
Sna13:3404434..3426030
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AA seq
490 aa
AA seq
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MRSEKDQMPGGREKSIVEIQFRDIPREQDAVFVNSKQKEEKKEVFTKVVIRRLPPNLSKD
QLEEQLSPLPSFDYFEFFPADQSLYPHLYSRAYINFKNPEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKVSKKKLKKKDAKAGSIEEDPEYCRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKLEKQRIREEKREERRRREMEKKRQREEEKRKRREEER
RKRKEADKLKKLSEKEIKIKLLKKSDRDDDMDSDRLKDKGDSGDMERAKWDKPSGQMKFK
EAKDKGQMESDKGEHGRRQRDKDHRGRDEERKRQRHHYEFDKFIRRKEETKWGKGYCQDR
AKKNGDHHGSYSYCPSMGDKVGKEDREGIGASRKDRTRNKVSDKARVSQSVLAHQDRGTS
QSEGPHQIGGALPNKDRPAMQLYQPGTRKCMGSASKGYELPIGQSPEHVAIDHCYEAIAM
GTGSEKSSED
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggaccaaatgcccggaggcagggagaaaagtatcgtcgagatacaa
tttagagacattccgagggaacaggacgccgtctttgtcaactcaaagcagaaagaagag
aagaaggaggtatttactaaggtagtaataaggcgacttccacccaacctgtccaaggac
cagctggaagaacagctcagtcctcttccatcctttgactactttgagttcttccctgca
gatcaaagcctctacccacacttgtactccagagcttacatcaacttcaaaaacccagag
gacatcctgctcttcagagaccgctttgatggctatgttttcattgataacaaaggccag
gagtacccagctgtggtagagtttgcaccctttcagaaagtatccaagaagaaactcaaa
aagaaagatgccaaagctggaagcattgaggaagacccggagtactgtcgctttctggag
aactactcctgtgatgaggagaagtccatggccaaccctgaaaccctgctgggagagata
gaggccaagacgagggaactcatagccaaaagaacaacacctcttctggagtacatcaag
aataagaaacttgagaagcagaggataagagaggaaaagagagaggagcgtcgacgcagg
gagatggagaagaaacgccagagggaggaagagaaaaggaagcggcgggaggaggagaga
cgcaaacgcaaggaggcggataaactgaagaagctgtcggagaaggagatcaagattaag
ctcctaaagaagagtgaccgggacgatgacatggactctgacaggctcaaggacaaaggg
gacagtggggatatggagagggccaagtgggacaaacccagtggacaaatgaagttcaag
gaagccaaggacaagggtcagatggagagcgataagggagaacatggccgcaggcagaga
gacaaagaccacagaggaagagacgaggagaggaaacgacagcgccaccactatgagttt
gacaagttcatacggcgcaaggaggagacaaagtggggtaaaggctactgccaggaccgg
gccaagaaaaatggcgaccaccacggctcctactcctactgccccagtatgggcgacaag
gtgggtaaggaggacagggagggcattggcgctagcaggaaggaccgcacccggaacaag
gtgagcgacaaggctcgtgtctctcagtctgtgttagcccatcaggacagagggacgtcc
cagtcagaggggccacaccagataggaggggctctgccaaacaaggaccgaccggccatg
cagctctaccagcctggcactcgcaaatgcatgggctcagcgagcaaaggttacgagctc
cccatcggccagtcgccagaacacgttgcgatagatcactgctatgaggccattgccatg
ggaacaggctcggaaaagagtagtgaagattag
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