Salvelinus namaycush (lake trout): 120058221
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Entry
120058221 CDS
T07522
Name
(RefSeq) chondroitin sulfate synthase 2-like
KO
K00747
chondroitin polymerizing factor [EC:
2.4.1.175
2.4.1.226
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh00532
Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
snh01100
Metabolic pathways
Module
snh_M00058
Glycosaminoglycan biosynthesis, chondroitin sulfate backbone
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
120058221
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
snh01003
]
120058221
Enzymes [BR:
snh01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.175 glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase
120058221
2.4.1.226 N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase
120058221
Glycosyltransferases [BR:
snh01003
]
Glycan extension
O-Glycan
120058221
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CHGN
Fringe
Motif
Other DBs
NCBI-GeneID:
120058221
NCBI-ProteinID:
XP_038862643
UniProt:
A0A8U1C4V5
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Position
Sna13:complement(9572590..9585472)
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AA seq
763 aa
AA seq
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MRFAMFISLLRPIGPVIIGVSLGFTLSLLSVNWVEETCVLDGKASEEIRLAQDGNSKGAR
RPNSISTVDAEEDFEPRIVPYKPVQQSQTKQLFRAKYISTELGIRERLFVGILTSKSTIN
TMGVAVNRTISHHLDTVVFFTGMRNRKVPHGMFVVTHGDERLIWNIFQTIKYILEHYVHE
YDWFYLAQDDTYTEADRIKQLVDHLSIDRELYMGSPEEFIGGEMEGRYCYGGFGYLLSRT
LLLRLKPFLENCRNDILSARPDEWLGRCIIDYANTNCVDEHEGLQYYHYEMGKNSDPSKV
ENVQFKNALTVHPVSDPEQMYRLHKHFTEIELQRTYDEIEKLQAEIKNVSKVAFDGNRSA
QWPIGINPMFEPKSRFEVLRWDYFTEEQVYSCIDGSPKCELRGIDRLDVADVIEIAMGEL
NKKYKPVLHLKKQQLINGYRRFDPTRGMEYTLDLQLEVVNQKGRSRSITKRVHLVRPLSR
IEIIPMPYVTEATRVHIILPLTFQERGAVNHFLEVFATNLFETSENAILTLLFIYDPFEA
QQVNQNDIFTGVKAQINVYERKYPAVKILWISVKTETPSQIKFMDIISKKHPVDTLFFIT
NVNTNVNSEFLNRCRMNSINNWQVFFPIHFQDYNPDIAFHNQEPPPTVDLVKDAGHFDRS
SFEEACFYNSDYMVTRTRMASDVQENEEIMETLDIYDMFVKYSILHVFRAVEPALHQKYR
HQACNPQLSEGIYHRCVQSNLDGLGSRSQLAMLLFEQEQGNST
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgagatttgcaatgtttatttctctgctgaggccgatcgggccggttattatcggtgtt
tctttgggatttaccttaagtttacttagtgtgaattgggtagaggaaacttgtgtcctc
gacgggaaagcgagtgaagaaatacgtttggcccaagatgggaattcaaaaggagcgagg
agacccaattcgatatcgacagtggatgccgaggaagattttgagccaagaatagtgcca
tataaaccagtccaacaaagccaaacaaagcaactttttcgggctaagtacatcagtaca
gagctggggatccgggagcgcctcttcgtagggatcctgacgtccaaaagcaccatcaac
acaatgggagtggccgtgaaccgcaccatcagccaccacctggacactgtggtcttcttc
acaggcatgcgcaaccgcaaagtgccccacggcatgttcgtggtcacccatggggacgag
aggctcatatggaacattttccagaccatcaagtacatcttggagcactatgtccatgag
tatgactggttctatctggcccaggacgacacctacacagaggcagaccggatcaaacag
ctggtggatcacctgagcatagaccgggagctttacatgggcagccctgaggagtttata
ggtggggagatggaggggaggtactgctacggtgggttcggatacctcctgtcccgtacc
ctgctgctccggctcaaacccttcctggagaactgtaggaatgacatcctgagcgccagg
cctgacgagtggctgggcagatgcatcattgattatgccaacaccaactgtgtggatgag
catgaggggctgcagtactaccattacgagatgggcaagaactcggatccgagtaaggtg
gagaatgtgcagtttaagaatgccttgactgtccacccggtatctgaccctgagcagatg
tacagactacacaaacacttcactgaaatcgaacttcagaggacatacgatgagatcgag
aagctgcaggcagagataaagaatgtgagcaaagtggcttttgatggcaaccggagcgcc
cagtggcccattgggatcaatcctatgtttgagccgaagtctcgttttgaggtcctccga
tgggactacttcacagaggagcaggtgtattcatgcattgacggctcccccaagtgtgaa
ctgcgtggcattgatcggttggatgttgccgacgtcatcgagatagccatgggggagctg
aacaagaagtacaagcctgtcctccacctgaagaagcagcagctgatcaacggctaccgc
cgctttgatcccactcggggcatggagtacacactggacctgcagctggaggtagtcaac
cagaagggccgcagtcgctccatcaccaagagggtccacctggtgcgtcctctgagtcgc
atcgagatcatccccatgccttatgtcacagaggccaccagggttcatatcatcttaccg
ttgacttttcaggaacggggtgccgtcaaccattttctagaagtgtttgccaccaatttg
tttgagaccagtgaaaacgccatcttgactttactgtttatctacgacccattcgaggcc
cagcaggtcaaccagaatgacatattcaccggtgttaaagcgcagatcaatgtatacgaa
cgcaagtatccggcagtgaagatcctgtggataagtgtcaagacagaaaccccttctcaa
atcaaattcatggacatcatttccaagaagcacccagtagacacgctgttcttcatcacc
aacgtcaacaccaacgtcaactccgagttcctcaaccgttgtcgcatgaactccatcaac
aactggcaggtgttcttcccaatccacttccaggactacaacccagacatcgccttccac
aaccaggagcccccacccacagtagacctggtcaaggacgccggacactttgaccgcagt
tctttcgaggaggcgtgcttctacaactccgactacatggtgacgcgcacgcgcatggcc
tccgacgtgcaggagaacgaggagatcatggagaccttggatatctacgacatgtttgtc
aagtactccatcctgcatgtgttcagggctgtggagccggctctgcaccagaagtaccgc
caccaggcctgtaacccgcagctcagtgagggcatctaccacaggtgtgtccagagcaac
ctggatggcctgggatcccgttcccagctcgccatgctgttatttgaacaagagcaagga
aatagcacttga
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