Salvelinus namaycush (lake trout): 120064043
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Entry
120064043 CDS
T07522
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A
KO
K14328
regulator of nonsense transcripts 3
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03013
Nucleocytoplasmic transport
snh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120064043 (upf3a)
03015 mRNA surveillance pathway
120064043 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120064043 (upf3a)
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120064043 (upf3a)
mRNA cycle factors
P-body specific factors
120064043 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
PagP
Motif
Other DBs
NCBI-GeneID:
120064043
NCBI-ProteinID:
XP_038870281
UniProt:
A0A8U1F5M5
LinkDB
All DBs
Position
Sna19:48606329..48638642
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AA seq
483 aa
AA seq
DB search
MRSEKDQMTGGREGSVVEIQLRDIPRGQDAVSINSKQKEEKKEVFTKVVIRRLPPNLSKD
QLEEQLSPLPSYDYFEFFPADQSLYPHLFSRVYINFRNSEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKVSKKKVKKKDSKAGSIEEDPEYRRFLENYSCDEEKSMANPETLLGEI
EAKTKKLIAKRTTPLLEYIKNKKLEKHRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEADKQKKLSEKEIKIKLLKKSDRDDDVDSDRLKDKGDSGDIERAKWDKPSGHMKSK
ETKDHRGQMESDKEQREHGRRQRDKDHRGRDEERKRQRHHYEFDKSMRCKEDTKWGKGYC
QDRAKKDGQYHSSYSYCPDTCDKVVREDIGGSRKDRVRNKSVLAYQDRRTSQSEGPHQIG
GALPNKDRPAMQLYQPGAHNRKRVSSAMKGYELPMNHSPERAVADRCYEAAAMETGSEIC
SDE
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggaccaaatgaccggaggcagggagggaagtgtcgtcgaaatacaa
ctccgagatattccgagaggacaggacgccgtctccattaactcaaagcagaaagaagag
aagaaggaggtctttactaaggtagtaataaggcgacttccacccaacctgtccaaggac
cagctggaagaacagctcagtcctcttccatcctatgactacttcgagtttttccctgct
gatcaaagcctctatccacacctgttctccagagtttacattaacttcagaaactcagaa
gacatcctgctcttcagagaccgctttgatggctatgttttcattgataacaaaggacag
gagtacccagctgtggtagagtttgccccctttcagaaagtctccaagaagaaggtcaaa
aagaaagattccaaagctggaagcattgaagaagacccggagtaccggcggtttctggag
aactactcctgtgatgaggagaagtccatggccaaccctgaaaccctgctgggagagata
gaggccaagacaaagaaactcatagccaaaagaacaacacctcttctggagtacatcaag
aataagaaacttgagaagcacaggataagagaggagaagagagaggagcgtcgacgcagg
gagctggagaagaaacggcagagggaggaggagaagaggaaacggagggaggaggagaga
cgcaaacgcaaggaggcggataaacagaagaaactatcggagaaggagatcaagatcaag
ctcctgaagaagagtgaccgggacgatgatgtggactctgacaggctcaaggacaaagga
gacagtggggacatagagagggccaagtgggacaaacccagtggacacatgaagtcaaag
gaaaccaaggaccacaggggtcagatggagagcgataaggagcagagagagcacggccgc
aggcagagagacaaagaccacagaggaagagacgaggagaggaaacgacagcgccaccac
tacgagttcgacaagtccatgcggtgcaaggaggataccaagtggggtaaaggctactgc
caggaccgggcaaagaaagatggccaataccacagctcctactcctactgccccgacacg
tgcgacaaggtggtcagagaggacattggcggtagcaggaaggatcgcgtccggaacaag
tctgtgttagcctatcaggacagaaggacgtcccagtcagaggggccacaccagatagga
ggggctctgccaaacaaggaccggcctgccatgcagctctaccagccaggcgctcacaat
cgcaagcgcgtgagctctgcgatgaaaggttatgagcttcccatgaaccactcgccagaa
cgcgcggtggcggaccgctgctacgaggccgccgccatggaaacgggctcggaaatatgc
agcgacgagtag
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integrated database retrieval system
