Streptomyces nigrescens: HEK616_02430
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Entry
HEK616_02430 CDS
T08756
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
snig
Streptomyces nigrescens
Pathway
snig03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
snig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HEK616_02430 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snig03400
]
HEK616_02430 (mfd)
Enzymes [BR:
snig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HEK616_02430 (mfd)
DNA repair and recombination proteins [BR:
snig03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HEK616_02430 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BDM66756
LinkDB
All DBs
Position
258247..261822
Genome browser
AA seq
1191 aa
AA seq
DB search
MSLTGLLDAVVRDPALAEAVRAATDGRRPHVDLVGPPAARPFVIAALAREAKRPVLAVTA
TGREAEDLAAALRSLMPAGEDNSVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLTHPSQ
DDPTAGPVSVVVAPIRSVLQPQVKGLGDLEPVSLRTGQTADLEEIVDGLAAAAYARVELV
EKRGEFAVRGGILDVFPPTEEHPLRIEFWGDDVEEIRYFKVADQRSLEIAEHGLWAPPCR
ELLLTADVRDRAATLAELHPELGELLGKIAEGIAVEGMESLAPVLVDEMELLLDVLPKGS
MAVVCDPERVRTRAADLVATSQEFLQASWAATAGGGDAPIDVGAASLWGIADVRDRAREL
DMMWWSVTPFASGDIGPGADGDEDLAGGDDGDTLKLGLQAPETYRGDTQRALADTKQWLA
DGWRTVYVTEAHGPAARTVEVLGGEGIAARLDADLPEISPALVHVACGSLDNGFVAPQLQ
LAVLTETDLSGQKAAGKDGQRMPARRRKTIDPLTLEAGDYIVHEQHGVGRYIEMVQRTVQ
GATREYLLVEYAPAKRGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAK
KAVKEIAADLIKLYSARMAAPGHTFGPDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEK
SVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHYGTFTERYGQFPV
SVKALSRFQTDTEAKATLEGLRDGAVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEH
KEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEQKQI
GAAIRRELLREGQVFYIHNRVESIDRAAARLREIVPEARIATAHGQMSESALEQVVVDFW
EKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPP
EKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRM
VGEAVADYRASLEGGVEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANSEED
IAAVREELTDRYGKLPEPVENLLLVAGLRMLARSCGVSDITLQGANIRFGPVDLRESQEL
RLKRLYPRTVLKPAAHQILVPRPTTAKIGGKPVVGRELLAWVGEFLTTVLT
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgactggtctgctcgacgccgtcgtacgggacccggcgctcgccgaagcggtc
cgggccgcgaccgacggacgccgcccgcacgtggatctcgtgggcccgccggccgcccgc
ccgttcgtgatcgccgcgctcgcccgcgaggcgaagcgcccggtgctggcggtcaccgcc
accggccgggaggccgaggacctcgccgccgcgctgcgcagcctgatgccggccggcgag
gacaactccgtcgtcgagtacccgtcctgggagacgctgccgcacgagcggctctccccg
cgctcggacaccgtcggccggcgcctggcggtgctccgccggctcacccaccccagccag
gacgaccccaccgcgggccccgtctccgtcgtcgtcgcgccgatccgctcggtgctccag
ccgcaggtcaagggcctgggcgacctggagccggtcagtctgcgcacgggccagaccgcc
gatctggaggagatcgtcgacggcctggcggcggccgcctacgcccgcgtcgaactggtc
gagaagcgcggcgagttcgcggtccgcggcggcatcctggacgtcttcccgcccaccgag
gagcaccccctccggatcgagttctggggcgacgacgtcgaggagatccgctacttcaag
gtcgccgaccagcgctccctggagatcgccgagcacggcctgtgggcgccgccgtgccgt
gagctgctgctcaccgcggacgtccgcgaccgggccgcgaccctcgccgagctccacccg
gagctgggcgaactcctcggcaagatcgccgagggcatcgcggtcgagggcatggagtcg
ctcgcaccggtcctcgtcgacgagatggagctgctgctcgacgtcctgcccaagggctcc
atggccgtggtctgcgacccggagcgggtgcgcacccgggccgccgacctggtcgcgacc
agtcaggagttcctacaggccagctgggccgcgacggcgggcggcggcgacgcgcccatc
gacgtcggcgcggcgtccctgtggggcatcgcggacgtccgcgaccgcgcccgtgagctg
gacatgatgtggtggtcggtgacgccgttcgcctccggcgacatcgggcccggtgccgac
ggcgacgaggacctggccggcggggacgacggcgacaccctcaagctgggcctgcaggcc
cccgagacgtaccgcggcgacacccagcgggcgctggccgacaccaagcagtggctcgcc
gacggctggcgcacggtctacgtcaccgaggcgcacggccccgcggcccgtacggtcgag
gtgctcggcggcgagggcatcgccgcccgcctggacgccgacctccccgagatctcgccg
gccctcgtccacgtcgcctgcggctccctcgacaacggcttcgtcgccccgcagctccag
ctcgccgtgctgaccgagaccgacctgtccggccagaaggccgccggcaaggacggccag
cggatgccggcccgccgccgcaagaccatcgacccgctcaccctcgaagcgggcgactac
atcgtccacgaacagcacggcgtgggccgctacatcgagatggtgcagcgcacggtccag
ggcgccacccgcgagtacctcctcgtcgagtacgcccccgccaagcgcggccagcccggc
gaccgcctctacatccccaccgaccagctggagcaggtcaccaagtacgtgggcggcgag
gccccgaccctgcaccgcctcggcggcgccgactggacgaagaccaaggcgcgcgcgaag
aaggccgtcaaggagatcgcggccgacctgatcaagctgtactcggcccggatggcggcc
cccggccacaccttcggcccggacaccccctggcagcgcgagctggaggacgccttcccg
tacgcggagacgcccgaccagctcaccaccatcgccgaggtcaaggaggacatggagaag
tcggtcccgatggaccggctgatctgcggcgacgtcggctacggcaagaccgagatcgcg
gtccgcgcggccttcaaggcggtccaggacggcaagcaggtcgccgtcctggtcccgacc
acgctgctcgtccagcagcactacggcaccttcaccgagcggtacggccagttcccggtc
agcgtcaaggcgctgtcccgcttccagaccgacaccgaggccaaggcgaccctggagggc
ctgcgggacggcgccgtcgacatcgtcatcggcacccaccgtctgttctcctccgagacc
aagttcaaggacctgggcctggtcatcgtcgacgaggagcagcgcttcggcgtcgagcac
aaggaacagctcaagaagctccgcgccaacgtcgacgtcctgacgatgtccgcgaccccg
atcccccggaccctcgaaatggcggtcaccggcatccgcgagatgtccacgatcaccacc
ccgccggaggagcggcacccggtcctgaccttcgtcggcccctacgagcagaagcagatc
ggcgccgccatccgccgcgaactgctccgcgagggccaggtcttctacatccacaaccgc
gtcgagtccatcgaccgcgccgccgcccgcctccgcgagatcgtccccgaggcgcggatc
gccaccgcccacggccagatgtcggaatccgccctcgaacaggtcgtcgtcgacttctgg
gagaagaagttcgacgtcctggtctccaccacgatcgtcgaatccggcatcgacatctcc
aacgccaacaccctgatcgtggagcgcggcgacaacttcggcctctcgcagctgcaccag
ctccgcggccgggtcggccgcggccgcgaacgcggctacgcgtacttcctctacccgccc
gagaagccgctgaccgagaccgcccacgagcgtctcgccaccatcgcccagcacacggag
atgggcgccggcatgtacgtcgccatgaaggacctggagatccgcggcgccggaaacctc
ctcggcggcgagcagtccggccacatcgccggcgtcggcttcgacctgtacgtgcggatg
gtgggcgaggcggtcgccgactaccgggcctcgctggagggcggtgtcgaggaggagccg
ccgctggaggtcaagatcgagctgccggtcgacgcgcacgtcccgcacgactacgccccc
ggcgagcggctgcgtctccaggcgtaccgcgccatcgcttccgcgaactccgaggaggac
atcgcggcggtccgcgaggagctcaccgaccgctacggcaagctgcccgagccggtcgag
aacctcctgctcgtcgccggcctgcggatgctggcccgttcctgcggcgtctcggacatc
accctccagggcgccaacatccgcttcggcccggtcgacctccgcgagtcccaggaactc
cgcctgaagcggttgtacccccgtacggtcctcaagccggccgctcaccagatcctggtt
ccgcgtcccacgacggccaagatcggcggcaagccggtggtgggacgtgagttgctcgcc
tgggtgggcgagttcctcacgacggttttgacgtag
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