Streptomyces nitrosporeus: CP967_20515
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Entry
CP967_20515 CDS
T06889
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
snk
Streptomyces nitrosporeus
Pathway
snk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
snk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CP967_20515 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snk03400
]
CP967_20515 (mfd)
Enzymes [BR:
snk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CP967_20515 (mfd)
DNA repair and recombination proteins [BR:
snk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CP967_20515 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
MFD_D3
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QEU74060
UniProt:
A0A5J6FGE5
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All DBs
Position
4604324..4607857
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AA seq
1177 aa
AA seq
DB search
MSLHGLLDVVVTDPALSEAVKAASDGHRAHVDLVGPPAARPFVVAALAREAGRPVLAVTA
TGREAEDLAAALRTLLPPDTVAEYPSWETLPHERLSPRSDTVGRRLAVLRRLTHPRPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVALSSGQSADLNEVVDALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKIADQRSLEVAEHGLWAPPCRELL
LTEDVRRRAAALAEAHPELGELLGKIAEGIAVDGMESLAPVLVDEMELLLDVLPEGAMAL
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLRGIADVRERARELGMM
WWTASPFAADDEDTDEDTLKLGMRAPETYRGDTARALADTKGWLADGWRTVYVTEGHGTA
SRIAGVLGGEGIAARVDQVLTGIEPSLVHVACAALDHGFVDPGLKLAVLTETDLTGQRTA
SKDLGRMPARRRKSVDPLTLESGDYIVHEQHGVGRYIEMVQRTVQGATREYLLVEYAPAK
RGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKQRAKKAVKEIAADLIKLYS
ARMAAPGHPFAPDTPWQRELEDAFPYAETPDQLSTIAEVKEDMEKSVPMDRLICGDVGYG
KTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHYGTFTERYAQFPVNVRALSRFQSDTESK
ATLEGLRDGSVDLVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLT
MSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEQKQIGAAVRRELLREGQVF
YIHNRVESIDRAAARLREIVPEARIATAHGQMGEGALEQVVVDFWEKKFDVLVSTTIVES
GIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRDRGYAYFLYPPEKPLTETAHERLATI
AQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYIRMVGEAVADYRAAVDGG
VEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRSIASANSEEDIRAVREELTDRYGKL
PEPVENLLLVAGLRMLARACGVGEIVLQGPNIRFAPVELRESQELRLKRLHPKAVIKQSA
HQILVPRPTAGRIGGKPVVGRELLAWTGEFLTTILGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctggacgtcgtcgtcaccgatccggcgctctcggaagcggtg
aaggccgcgtccgacggccaccgggcccacgtcgacctggtcggcccgccggccgcccgc
cccttcgtggtggccgccctggcccgggaggccgggcggccggtcctcgcggtcaccgcg
acgggccgcgaggcggaggacctggcggccgcgctgcggacgctgctgccgccggacacg
gtcgcggagtacccgtcctgggagaccctgccgcacgagcggctgtcaccccgctcggac
accgtggggcggcgcctggcggtgctgcggcggctgacgcacccgcgcccggacgacccg
gagaccggtccggtctcggtcgtcgtcgcaccggtccgctcggtgctccagccgcaggtc
aaggggctcggcgatctggagccggtggcgctgagcagtgggcagagcgcggacctgaac
gaggtcgtggacgcgctcgcggcggccgcgtacgcccgggtcgagctggtcgagaagcgc
ggcgagttcgccgtgcgcggcgggatcctggacgtcttcccgccgaccgaggagcacccc
ctgcgggtggagttctggggcgacgacgtcgaggagatccgctacttcaagatcgccgac
cagcggtcgctggaggtcgccgagcacgggctgtgggccccgccctgccgtgagctgctg
ctgaccgaggacgtgcggcggcgcgcggcggcactggccgaggcccatcccgagctgggg
gagctgctcggaaagatcgccgagggcatcgcggtcgacggcatggagtccctcgcgccg
gtcctggtcgacgagatggagctgctgctggacgtcctgccggagggggccatggcgctg
gtctgcgacccggagcgggtgcggacccgggcggccgacctggtcgccaccagccaggag
ttcctccaggcgtcctgggcggccacggcgggcggcggcgaggcgccgatcgacgtcggg
gcggcgtcgctgcggggcatcgcggacgtccgggagcgggcccgtgaactggggatgatg
tggtggaccgcgtccccgttcgccgcggacgacgaggacaccgacgaggacaccctgaag
ctggggatgcgcgctccggagacctaccggggcgacaccgcgcgggcgctggccgacacc
aagggctggctggccgacggctggcgcacggtgtacgtcaccgaggggcacggcacggcg
tcgaggatcgccggggtgctgggcggcgaggggatcgcggcccgggtcgaccaggtgctg
accgggatcgaaccgtcgctggtgcacgtggcgtgcgcggcgctggaccacgggttcgtg
gacccgggcctgaaactggcggtgctgaccgagaccgatctgacggggcagcgcaccgcc
agcaaggacctggggcggatgccggcccgccggcgcaagtcggtcgacccgctgaccctc
gaatcgggcgactacatcgtgcacgagcagcacggggtcggccggtacatcgagatggtc
cagcggaccgtgcagggcgcgacccgcgagtacctcctcgtggagtacgcccccgccaag
cgcggccagcccggcgaccggctgtacatcccgaccgaccagctggaacaggtcaccaag
tacgtcggcggggaggcgcccaccctgcaccggctgggcggcgcggactggacgaagacg
aagcagcgggcgaagaaggcggtcaaggagatcgccgccgacctgatcaagctgtactcg
gcgcggatggcggcccccgggcaccccttcgccccggacaccccctggcagcgggaactg
gaggacgccttcccgtacgcggagacgcccgaccagctgtccacgatcgccgaggtcaag
gaggacatggagaagtcggtcccgatggaccggctgatctgcggcgacgtcggctacggc
aagacggagatcgcggtgcgcgccgcgttcaaggcggtccaggacggcaagcaggtcgcc
gtgctcgtcccgacgacactgctggtccagcagcactacggcacgttcaccgagcggtac
gcccagttcccggtcaatgtgcgggcactgagccggttccagtccgacaccgagtcgaag
gcgacgctggaggggctgagggacggctcggtcgacctggtcatcgggacgcaccggctg
ttctcgtcggagacgaagttcaaggacctgggcctggtcatcgtcgacgaggagcagcgc
ttcggtgtcgagcacaaggagcagctgaagaagctccgcgccaacgtcgacgtcctgacg
atgtcggcgacaccgatcccgcgcaccctggagatggcggtcaccggcatccgcgagatg
tcgacgatcaccaccccgccggaggagcggcacccggtcctgaccttcgtcgggccgtac
gagcagaagcagatcggcgcggcggtgcggcgtgaactcctgcgtgagggccaggtgttc
tacatccacaaccgggtggagtcgatcgaccgggcggcggccaggctgcgggagatcgtc
ccggaggcgcggatcgcgacggcgcacgggcagatgggcgagggcgcgctggaacaggtc
gtcgtcgacttctgggagaagaagttcgacgtgctggtctccacgacgatcgtcgagtcc
ggcatcgacatctccaacgccaacacgctgatcgtggagcgcggcgacaacttcggcctc
tcccagctgcaccagctgcgcgggcgggtcggccgcggccgggaccgggggtacgcctac
ttcctgtacccgccggagaagccgctcaccgagaccgcgcacgaacgcctcgcgacgatc
gcccagcacacggagatgggcgcgggcatgtacgtggcgatgaaggacctggagatccgc
ggggcgggcaacctgctcggcggcgagcagtccgggcacatcgcgggcgtcggcttcgac
ctgtacatccggatggtcggtgaggcggtcgccgactaccgggcggcggtggacggcggg
gtggaggaggagccgccgctggaggtcaagatcgagctcccggtcgacgcgcacgtcccg
cacgactacgcccccggtgagcggctgcgcctccaggcgtaccggtcgatcgcctcggcc
aacagcgaggaggacatccgcgcggtacgggaggagctgaccgaccgctacggcaagctg
cccgagccggtggagaacctgctgctggtggcgggtctgcggatgctggcgcgggcctgc
ggggtgggcgagatcgtgctccagggcccgaacatccgcttcgcgccggtggagttgcgc
gagtcgcaggagctgcggctgaagcggctgcacccgaaggcggtcatcaagcagtccgcc
caccagatcctcgtcccgcgcccgacggcgggcaggatcggcgggaagccggtggtcggc
cgtgaactcctggcgtggaccggggagttcctgacgacgatcctgggttcgtag
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