Ancylobacter novellus: Snov_1696
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Entry
Snov_1696 CDS
T01258
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sno
Ancylobacter novellus
Pathway
sno03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Snov_1696
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sno03400
]
Snov_1696
Enzymes [BR:
sno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Snov_1696
DNA repair and recombination proteins [BR:
sno03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Snov_1696
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
MFD_D3
UB2H
SecA_DEAD
AAA_16
RecG_dom3_C
AAA_25
DUF4410
Motif
Other DBs
NCBI-ProteinID:
ADH89001
UniProt:
D7AAJ8
LinkDB
All DBs
Position
1753600..1757112
Genome browser
AA seq
1170 aa
AA seq
DB search
MKTPLIPITSRLAPGRTLTLANVPGGMEGLVIADLARALAAQDDAAWPTLFVICRDAERM
AELERALPFFAPGVEVLSFPAWDCLPYDRASPHGDIVARRMTTLARLARVKGREGGSIVL
TTVNAALQRVPRRDLVATQSFSAAPGNALSLDEVVAWAEINGYLRTSTVRDTGEYAVRGG
IVDLFPPGLPAPVRLDFFGDTLESIRSFDPETQRTAMQMRSLDLVPMSEFQLTTETMRRF
RMAYVAAFGAAQRGDLLYEAVSEGRRYPGMEHWLPLFHDGLDTLFDYAPGSPIFMEAQGG
EAAASRLDQIADYYDARKHGMEHGGGAPYKPLPPERLYLTAEEWERRRGEAANIALSGFA
LPESKDVIDLDGHAARSFAPERADPEAPLFDIAAEYLRDLAKKKRTILAAWSDGSRDRLA
TVLSDHGLKGTQTIGSRDAAEALPKGTIGLAVLGIESGFETDALALIGEQDILGDRLVRP
KRKARRPQDVIAELTSLTAGDLVVHVDHGIGRFIGLKTIEAMGAPHDCLEIHYAEGSKLF
LPVENLELLSRYGSEDTEAQLDRLGGGGWQARKARMKSRIREMAAELIKVAAQRQLHEAP
RLVPAAGLYDEFRARFPYEETEDQDAAIESVFDDLGSGHPMDRLVCGDVGFGKTEVALRA
AFAVALDGKQVAVVVPTTLLARQHFKTFSERFKGLPVVVRQASRLVSSKDMSETRKGLAD
GTVDIVVGTHALLGKTISFKDLGLVIVDEEQHFGVAHKEKLKQLRADVHVLTLTATPIPR
TLQLAMTGVRELSIIASPPVDRLAVRSFVTPFDPLIVREALLRERYRGGQSFYVCPRIED
LAEVKDFLDRQVPEVKVAVAHGQMAATQLEEIMSAFYDGQFDVLLSTTIVESGLDIPTAN
TLIIHRADMFGLAQLYQLRGRVGRSKTRAYAIFTLPAEKQVTAQAERRLKVLQSLDTLGA
GFQLASHDLDIRGAGNLLGDEQSGHIKEVGYELYQEMLEEAIANLKAGITAPVADKWSPQ
ISIGMPVLIPEDYVADLHVRLTLYRRLADLETDAEIEAIGAELVDRFGPLPEEVEQLLKL
VAIKALCRRANVEKVDAGPRGAVLTFRDGRFPNPAGFIAYVGKPHVVAKMRPDGKVVFSE
DWPNANARLKGSAGILRQLAKIAEQGAKAA
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgaagaccccgcttatccccatcacctcgcgcctcgcgccgggccgcacgctgaccctc
gccaatgtccccggcggcatggaggggctggtcatcgccgacctcgcgcgcgccctcgcg
gcgcaggacgacgcggcatggccgacgctgttcgtcatctgccgcgacgccgagcgcatg
gcggagctggagcgcgcgctgcctttcttcgcgcccggcgtcgaggtgctgtccttcccg
gcgtgggactgcctgccctatgaccgcgcctcgccgcatggcgacatcgtcgcccgccgc
atgacgacgctcgcccgcctcgcgcgggtgaagggccgcgagggcggctccatcgtgctg
accacggtgaacgccgcgcttcagcgcgtgccgcggcgcgacctcgtggcgacgcagtcc
ttctcggccgcgccgggcaacgcgctctcgctcgacgaggtggtggcctgggcggagatc
aacggctatctgcgcacctccaccgtgcgcgacaccggcgaatatgcggtgcgcggcggc
atcgtcgacctgttcccgccgggcctgccggcgccggtgcggctcgacttcttcggcgac
acgttggaatcgatccgctccttcgatcccgagacgcagcgcacggcgatgcagatgcgc
tcgctcgacctcgtgccgatgagcgagttccagctcaccaccgagaccatgcgccgcttc
cgcatggcctatgtcgccgccttcggcgccgcccagcgtggcgacctgctctatgaggcg
gtgagcgaggggcggcgctatcccggcatggagcactggctgccgctgttccatgacggg
ctcgacacgctgttcgactacgcccccggctcgcccatcttcatggaagcgcagggcggg
gaggcggcggcttcgcggctcgaccagatcgccgactattacgacgcccgcaagcacggc
atggagcatggcggcggcgcgccctacaagccgctgccgcccgagaggctgtacctcacc
gccgaggaatgggagcgccggcgcggcgaggcggcgaacatcgcgctgtccggcttcgcc
ctgccggaatcgaaggacgtcatcgacctcgacggccacgcggcgcggtccttcgcgccg
gagcgcgccgatccagaggcaccgctgttcgacatcgccgccgaatatctgcgcgacctc
gccaagaagaagcgcacgatcctggccgcgtggtccgatggctcgcgcgaccgccttgcc
acggtgctgtccgatcatgggctgaagggcacgcagaccatcggctcgcgcgatgcggcg
gaggctctcccgaagggcaccatcggcctcgccgtgcttggtatcgaaagcggcttcgag
accgacgccctcgccctcatcggcgagcaggacatcctcggcgaccgcctcgtgcgcccc
aaacgcaaggcgcgccggccgcaggacgtcatcgccgaactcacctcgctcaccgccggc
gaccttgtggtgcatgtcgaccacggcatcggccgcttcatcggcctgaagaccatcgag
gcgatgggtgcgccgcacgactgcctcgaaatccattacgcggaaggctccaagctcttc
ctgccggtggagaacctcgaactgctctcgcgctacggctcggaagacaccgaggcgcag
ctcgaccggctgggcggtggcggctggcaggcgcgcaaggcgcggatgaagagccgcatc
cgcgagatggcggccgagctgatcaaggtggcggcgcagcgccagctgcacgaggcgccg
cgccttgtgcccgcggcgggcctttatgacgagttccgcgcccgcttcccctatgaggag
accgaggaccaggacgccgccatcgagtcggtgttcgacgatctcggctccggccacccg
atggaccggctggtgtgcggcgacgtcggcttcggcaagaccgaggtggcgctgcgcgcc
gccttcgccgtggcgctcgacggcaagcaggtggcggtggtggtgccgaccacgctgctg
gcacgccagcacttcaagaccttctccgagcgcttcaaggggctgccggtcgtggtgcgg
caggcctcgcgcctcgtctcgtccaaggatatgtccgagaccaggaagggcctcgccgac
ggcacggtcgacatcgtcgtcggcacccatgcactgctcggcaagaccatctccttcaag
gatctcggcctcgtcatcgtcgacgaggagcagcatttcggcgtcgcccacaaggagaag
ctgaagcagctccgggccgacgtgcatgtgctgacgctgacggccacgcccattccccgc
accttgcagctcgcaatgaccggcgtgcgcgagctctccatcatcgcgtcgccgccggtg
gatcgcctggcggtgcgcagcttcgtgacgccgttcgatccgctgatcgtgcgcgaggcg
ctgctgcgcgagcgctaccgcggcgggcagagcttctatgtctgcccgcgcatcgaggac
ctcgccgaggtgaaggacttcctcgaccggcaggtgccggaggtgaaggtcgcggtggcg
catggccagatggcggcgacgcagctcgaagagatcatgtccgccttctatgacgggcag
ttcgacgtgctgctgtcgaccaccatcgtcgaatccgggctcgacatcccgaccgccaac
acgctgatcatccaccgcgccgacatgttcggcctcgcccagctctaccagctgcgcggg
cgcgtcggccggtcgaagacccgcgcctatgcgatcttcactttgccggcggagaagcag
gtgacggcgcaggccgagcgccggctgaaggttctgcaatcgctcgacacgctcggcgcc
ggcttccagctcgccagccacgacctcgacatacgcggcgccggcaatctgctgggcgac
gagcagtccggccacatcaaggaagtcggctacgagctctatcaggagatgctggaggag
gcgatcgccaacctcaaggccggcatcaccgcgccggtcgccgacaagtggtcgccgcag
atttccatcggcatgccggtgctgatccccgaggattacgtcgccgacctgcatgtgcgg
ctgacgctctatcgccgcctcgcggaccttgagaccgatgccgagatcgaggccatcggc
gccgagctcgtcgaccgcttcggcccgctccccgaggaagtcgagcagttgttgaagctc
gtcgccatcaaggcgctgtgccgccgcgccaatgtcgagaaggtcgatgccggcccgcgc
ggcgcggtgctcaccttccgcgacgggcgcttccccaaccccgccggctttatcgcctat
gtcggcaagccgcatgtggtggcgaagatgcgcccggacggcaaggtggtgttctccgag
gattggccgaacgccaatgcccggctcaagggcagcgccggcatcctgcgccagctggcg
aagatcgccgagcagggggcgaaggcggcatag
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