Sneathia vaginalis: VC03_00025
Help
Entry
VC03_00025 CDS
T03854
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sns
Sneathia vaginalis
Pathway
sns03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sns00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VC03_00025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sns03400
]
VC03_00025
Enzymes [BR:
sns01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VC03_00025
DNA repair and recombination proteins [BR:
sns03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
VC03_00025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
nSTAND3
UB2H
AAA_30
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AKC94999
UniProt:
A0A0E3UTE3
LinkDB
All DBs
Position
3432..6110
Genome browser
AA seq
892 aa
AA seq
DB search
MKKILKEEIEDIFKNIENTCIYISTSLKNMEYYEYILGKKGYNVTFFKTNVGSKKELIDI
NVRLINLLNKKKKNIIFIDFSLAMSIFFDKYDSFTLEVGKDYNLNKIEEKLQEYAYEKNY
LITEMGQYSRRGDLIDVYSATMDNPIRLDFFDVELEKIKIFDIDTQRSYENLKEIQIYSN
ILRGDKVLITELTGKTTSFFIENLELVEHSLETMLLLDNNDKEKILARYEVLKEKSEIIE
VALSENRNYQSEIEIKRKKELKKKMKYSSITELNKGDYVIHVEYGIGKYMGLKMMYDKEY
LLIQYADDGELYVPVEKLYRIEKYINISNKEPELYKLGTKGFKKKHKKYKEEIEKVAKEL
IRIQAKRKKDNGICFMEDTVFQKQFEEKFEYLETEDQKKAIEDVKKDMQSYKIMDRIICG
DVGYGKTEVAMRAAFKAIESGYQVALLAPTTILANQHYERFKKRFEGFPINIASYSRLST
RKGVLDDLISGKIDLLIGTHKILGDNVIFNNLGLLIIDEEQKFGVKHKEKIKEKKTNIDV
LTLTATPIPRTLNLALLGIRDISVISTPPLQKLPIKTEILNFNDEEKLKKVILEEIKRDG
QVFYISNDVKGMEDKVKYLKTLLPSFIGIEYIHGQLSAKEIKGKIDAFEKGEFQVLVAST
IIENGIDIANANTIIIEGFNNLGLSQIYQLRGRVGRSKRQAYCYLLKSLKQTQKGLKKQE
SISEIENISSGGYVIAMEDMNIRGAGEILGNKQHGAIESFGYDLYIKLLNEEIKRQKGEI
TFNNFEVKMDLKDKGYIPNDYIKEAERIKIYKRIVELTKISEVDDIKDEIEDRFGKIPKV
VNTFLDSVKIKIYCQKHKISKVEEKDDFLYFYFTNNVLKLSKKEVLEGEKDE
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaatacttaaagaagagatagaagatatttttaaaaatatagaaaatacttgt
atctacattagtacatcattgaaaaatatggaatattacgaatacatattagggaaaaaa
ggatataatgtaactttttttaagactaatgtaggaagtaaaaaagaattaatagatatt
aatgtaagattaattaatctcttaaataaaaaaaagaagaatataatatttatagacttt
tcattagcgatgtctatattttttgataaatacgatagttttactttggaagtaggtaaa
gactataacctaaataaaatagaagaaaaattacaagaatatgcatatgaaaaaaactat
ttaattactgaaatgggtcaatattcaagaagaggagatttaatagatgtatattcagca
actatggacaaccctattagactagatttttttgatgtagagttagagaagattaaaata
tttgatatagatacacaaagatcttatgaaaatttaaaagaaatacagatttattctaat
attttaagaggagataaggtattaataacagaattaactggtaaaactactagttttttc
atagaaaatctagaacttgtagaacatagtcttgagactatgttacttttagataacaac
gataaagaaaaaatacttgctagatatgaggtattgaaagaaaagtcagaaataatagag
gtagccttaagcgaaaatagaaactatcaatcagaaatagaaataaaaagaaaaaaagag
ttaaagaaaaaaatgaaatacagctctataacagaattaaataaaggagattatgtaatt
catgttgagtacggtataggtaagtatatggggcttaaaatgatgtatgacaaggaatac
ctattaatacagtatgctgatgatggagagctttatgtacctgttgaaaagctatatcgt
atagaaaagtatataaatatatcaaataaggaaccagaactatataaattaggtactaag
ggatttaagaaaaagcacaagaagtataaagaagaaattgaaaaagtagcaaaggaactt
attagaattcaagctaagagaaaaaaagacaatggtatttgttttatggaagacacagta
tttcaaaaacaatttgaagaaaaatttgaatatttagaaacagaagatcaaaaaaaagca
atagaagatgtaaaaaaagatatgcaaagctataaaataatggatagaataatatgcgga
gatgttggatatggtaagactgaagtagctatgagagcagcttttaaggctatagaaagc
ggttatcaggttgctttactagcaccaactacaatattagctaatcagcattatgaacgg
tttaaaaagcgatttgagggttttccgataaatatagcatcatactcaagactttcaact
agaaagggagtattagatgatttaattagtggtaagatagatcttttaataggtacacat
aaaattttaggtgataatgtcattttcaataatcttggactattaataatagatgaagaa
caaaagtttggtgttaaacataaggaaaaaataaaggaaaaaaagacgaatattgatgtt
ttaactctgactgcaacacctattcctagaacactaaatttggccttgttaggtattaga
gatatatcagtaatatcaacaccacctctacaaaaattaccaataaaaacagaaatatta
aattttaatgatgaagaaaaattaaaaaaagtaatattagaagaaattaaaagagatggt
caagtcttctatatctcaaatgatgtaaaaggtatggaagataaggttaaatatttaaaa
actctccttccaagctttataggcatagaatatatacacggtcaacttagtgcaaaagag
ataaaagggaaaatagatgcctttgaaaagggagaatttcaagttttagttgcatcaaca
ataatagaaaatgggatagatatagcaaatgctaatacgataattatagaaggctttaat
aacctaggtttatcacaaatttatcaattaagaggacgtgttggtagatcaaaaaggcaa
gcatattgctatctattaaaatcattaaaacaaacacaaaaaggtttaaaaaaacaagaa
agtataagtgaaattgaaaatatttcatcaggtggttatgtaattgccatggaggatatg
aatatacggggagctggtgaaattcttggaaataagcaacatggtgctatagaatctttc
ggttatgatttgtacattaaattactaaatgaagaaattaaaagacaaaaaggtgaaatt
acatttaataattttgaagtcaagatggatttaaaagataagggatatataccaaatgac
tacataaaggaagctgaaagaataaagatatataagcgtatagttgaattaacaaaaatc
agcgaagttgacgatattaaagatgaaatagaagatagatttggtaaaattcctaaagtt
gttaatacatttttagatagtgttaaaataaagatatattgtcaaaaacataaaataagt
aaagttgaagaaaaagatgatttcctttatttctattttacaaataatgtgttaaaatta
agtaagaaagaagttttggaaggtgaaaaagatgaataa
DBGET
integrated database retrieval system
