Streptomyces niveus: BBN63_03335
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Entry
BBN63_03335 CDS
T04887
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
snw
Streptomyces niveus
Pathway
snw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
snw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BBN63_03335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snw03400
]
BBN63_03335
Enzymes [BR:
snw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BBN63_03335
DNA repair and recombination proteins [BR:
snw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BBN63_03335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AQU65420
UniProt:
A0A1U9QMK8
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All DBs
Position
complement(798672..799814)
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AA seq
380 aa
AA seq
DB search
MSGTRGAGSGDSAPAAENSVRAGGRTVRIHRPGKVLFPASGGGAGLMKADLVEYYRSVAR
YMLPELRDRPLMLERHPDGVDGPRFMQKNIPGNYPDWARRAEMAKKGGTVTHPVCDDTAT
LVHLADQASITFHRWLSRVDRPDFPDRLVFDLDPAEDDFEPVRGAALLLGELLDQLRLPA
TLMTTGSKGLHVIVRLDRAAGFGEVRGFATDVARVLAARAPDRLTTEQRTDARGGRLYLD
VQRNAYAQTSVAPFSVRPAEGAPVATPISWDQLKDPEVTARRWTVTNVLEQARTRPWSAI
AARGRALGGVRKVAPSARRAGPAASGAVHRKAEDRCCGWTSRTWPTPTTRRGAVPGAAGQ
AGLCGHPLGPARRRLDVLSP
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcacacgcggagccggctcgggcgactccgctccggcggccgagaacagcgtc
cgtgccggtggtcggaccgtacgtatccaccggccgggcaaggtcctcttccccgcctcc
ggcggcggtgccggcctcatgaaggcggatctcgtcgagtactaccgctccgtcgcccgg
tacatgctgcctgaactcagggacaggccactgatgttggagcggcatccggacggagtc
gacggtccccgcttcatgcagaagaacattccgggtaactatcccgactgggcgcggcgg
gccgagatggcgaagaagggcgggaccgtcacgcacccggtgtgcgacgacaccgcgaca
ctcgttcaccttgccgaccaggcgagcatcaccttccaccgctggctgtcacgggtggac
cgcccggacttcccggaccggctggtgttcgatctcgacccggccgaggacgacttcgag
cccgtacgcggagccgcgctgctgctcggtgaactgctcgaccaactgaggctgccggcc
acgctgatgacgaccgggtccaaggggctgcacgtgatcgtccggctggacagagccgcg
ggattcggcgaggtacggggcttcgccaccgacgtggcacgcgtactggcggcccgtgcg
ccggaccgattgaccacggagcagcgcacggacgcccgtggcggccggctctatctggac
gtccagcgcaacgcgtacgcgcagacgtcggtcgcgcccttctcggtacgcccggcagag
ggcgcgccggtcgcgacacccatcagctgggaccagttgaaggatcccgaggtcaccgct
cggcgctggacggtgacgaacgtactggagcaggcgcgcacccgcccctggtccgcaatc
gcggccaggggcagggcgctagggggtgtccggaaagtagcgccgtccgcccgcagggcg
gggcccgcggcgtctggtgcggtgcatcgcaaggcggaggatcggtgttgtggatggacc
agccgtacttggccgactccgacaacgcggcgaggtgccgtgccaggcgctgcgggccag
gcgggactttgcggacaccccctaggtccggcacggcggaggctggacgtcctgtccccg
tag
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