Streptomyces niveus: BBN63_21100
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Entry
BBN63_21100 CDS
T04887
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
snw
Streptomyces niveus
Pathway
snw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
snw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BBN63_21100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snw03400
]
BBN63_21100
Enzymes [BR:
snw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBN63_21100
DNA repair and recombination proteins [BR:
snw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BBN63_21100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AQU68339
UniProt:
A0A1U9QW68
LinkDB
All DBs
Position
4885681..4889232
Genome browser
AA seq
1183 aa
AA seq
DB search
MSLHGLLDAVVRDPALAEAVGAAADGHRTHVDLVGPPAARPFAVAALARDAGRPVLAVTA
TGREAEDLAAALRSLLPADSVAEFPSWETLPHERLSPRSDTVGRRLAVLRRLAHPSADDP
GAGPVSVVVAPIRSVLQPQVKGLGDLEPVSLRGGGTADLNEVTEALAAAAYSRVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDIEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTPPVRERAAALAEVHPELSDMLGKIAEGIAVEGMEALAPVLVDDMELLLDVLPKGSMAL
VCDPERVRTRAADLVATSQEFLQASWAAGAGGGEAPIDVGAASLWGIADVRERARELGMM
WWSVAPFAADEELSRDTLKLGMRAPETYRGDTARALADTKGWLADGWRTVYVTEGHGTAA
RTVEVLGGEGIAARLDTPEAHGGKGLGEITPSVVHVARGSIEYGFVDRELGLAVLTETDL
SGQKAAGKDGVRMPTKRRKSIDPLTLEAGDYIVHEQHGVGRYVEMVQRTVQGATREYLLV
EYAPAKRGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKQRAKKAVKEIAAD
LIKLYSARMAAPGHAFGSDTPWQRELEDAFPYVETPDQLSTIAEVKEDMEKTVPMDRLVC
GDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYAQFPVVVRALSRFQ
SDAEAKATLEGLREGSVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRA
NVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELL
REGQVFYIHNRVESIDRATARLRQIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVS
TTIVESGIDIANANTLVVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAH
ERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYR
AAVDGTVQEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANSEADITAVREELT
DRYGKLPEPVENLLLVAGLRMLARACGVGEIVLQGSNIRFAPVELRESQELRLKRLHPRT
VIKPTAHQILVPRPTAGRIGGKPVVGRELLSWTGEFLATILGS
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtagtacgagacccggcgctcgccgaagcggtc
ggcgccgccgccgacgggcaccgcacgcatgtcgatctggtcggaccgcccgccgcccgc
cccttcgccgtggcggccctcgcacgggacgcgggccgcccagtgctcgccgtcaccgcg
accggccgggaggccgaggacctcgccgccgcgctgcggtcgctgctgcccgccgactct
gtcgcggagttcccgtcctgggagacgctgccgcacgagcgcctgtcgccccgcagcgac
accgtcgggcgccggctcgccgtgctgcgccgtctcgcgcaccccagcgccgacgacccg
ggcgccgggccggtcagtgtcgtcgtcgcgcccatccgttccgtgctccagccgcaggtc
aagggcctcggcgacctggagcccgtgtcgcttcgcggcggtggcaccgccgatctgaac
gaggtgaccgaggcgctggccgccgccgcgtactcccgagtcgaactggtcgagaagcgc
ggcgagttcgccgtacgcggcggcatcctggacgtcttcccgcccaccgaggagcacccg
ctgcgcgtggagttctggggcgacgacatcgaggagatccgctacttcaaggtcgccgac
cagcggtccctcgaagtcgccgagcacggtctgtgggcaccgccctgccgcgagctgctg
ctcacgccgcccgtacgggagcgggccgccgccctcgccgaggtgcaccccgagctgagc
gacatgctcggcaagatcgcggagggcatcgcggtcgagggcatggaggccctggccccg
gtcctcgtcgacgacatggagctgctgctcgacgtcctgcccaagggctcgatggcgctg
gtctgcgaccccgagcgggtccggacccgggccgccgacctggtcgccaccagccaggaa
ttcctccaggcgtcctgggcggccggggccggcggcggcgaggcgcccatcgacgtcggc
gcggcgtcgctgtggggcatcgcggacgtccgcgagcgggcacgcgagctggggatgatg
tggtggtcggtggcgccgttcgccgccgacgaggagctgtcgcgggacaccctcaagctg
ggcatgcgcgccccggagacgtaccgcggcgacaccgcccgcgccctcgccgacaccaag
ggctggctcgccgacggctggcgcaccgtctatgtcaccgagggccacggcaccgccgcc
cgtaccgtcgaggtgctcggcggcgagggcatcgccgcccgcctcgacacccccgaggca
cacggcggcaagggcctgggcgagatcaccccgtccgtcgtgcatgtcgcgcgcggctcg
atcgagtacggcttcgtggaccgggagctggggctcgccgtcctcacggagaccgacctg
tccggccagaaggctgcgggcaaggacggcgtacggatgccgaccaagcgccgcaagtcg
atcgacccgctgaccctggaggccggcgactacatcgtccacgagcagcacggcgtcggc
cggtacgtcgagatggtgcagcgcaccgtccagggcgcgacgcgcgaatatctgctcgtc
gagtacgcccccgccaagcgcggccagcccggcgaccgcctctacatccccaccgaccag
ctcgaacaggtcaccaagtacgtgggcggcgaggcaccgaccctgcaccggctcggcggc
gccgactggacgaagaccaagcagcgcgccaagaaggccgtcaaggagatcgccgccgac
ctcatcaagctctactccgcgcgcatggcggcccccggccacgccttcggctcggacacg
ccctggcagcgggagctggaggacgcgttcccgtacgtggagacgcccgaccagctctcc
acgatcgccgaggtcaaggaggacatggagaagacggtccccatggaccgcctcgtctgc
ggcgacgtcggctacggcaagacggagatcgccgtgcgcgccgccttcaaggccgtccag
gacggcaagcaggtcgcggtgctcgtcccgacgacgctgctcgtgcagcagcacttcggc
acgttctccgagcggtacgcgcagttccccgtcgtcgtcagggccctgtcccgtttccag
agcgacgcggaggccaaggcgaccctcgaaggactgcgcgagggatcggtcgacatcgtc
atcggcacccaccgtctcttctcctccgagacgaagttcaaggacctcggtctggtcatc
gtggacgaggagcagcgcttcggcgtcgagcacaaggagcagctgaagaagctgcgcgcc
aacgtcgacgtactgaccatgtccgcgacaccgatcccgcgcaccctggagatggcggtg
accggcatccgcgagatgtcgaccatcaccaccccgccggaggagcggcacccggtgctg
accttcgtcggcccgtacgaggagaagcagatcggcgcggccatccgccgtgaactgctg
cgcgagggccaggtcttctacatccacaaccgcgtcgagtcgatcgaccgggccacggcg
cggctgcgccagatcgtgcccgaggcgcggatcgcgaccgcgcacggccagatgtccgaa
caggccctggaacaggtcgtggtggacttctgggagaagaagttcgacgtcctggtctcc
accacgatcgtggagtccggcatcgacatcgccaacgccaacaccctcgtggtggaacgc
ggcgacaacttcggtctctcccaactccaccagctgcgcggccgggtgggccggggccgg
gagcgcgggtacgcgtacttcctctacccgccggagaagccgctgaccgagaccgcgcac
gaacgcctcgcgacgatcgcccagcacaccgagatgggcgccggcatgtacgtcgcgatg
aaggacctggagatccgcggcgcgggcaatctgctcggcggcgaacagtccgggcacatc
gcgggtgtcggcttcgacctgtacgtacgcatggtcggcgaggccgtcgcggactaccgc
gcggccgtcgacggcacggtgcaggaggagccgccgctggaggtcaagatcgagctgccg
gtcgacgcgcacgtcccgcacgactacgcgcccggcgagcggctgcgcctccaggcgtac
cgcgcgatcgcctccgccaactcggaggccgacatcacggccgtacgggaggagctgacg
gaccggtacggcaagcttcccgaaccggtggagaacctgctgctggtggcggggctgcgg
atgctggcgcgggcctgcggggtcggcgagatcgtcctccagggctccaacatccgcttc
gcgccggtggagttgagggagtcgcaggagctgcggctcaagcgtctgcacccccgtacg
gtcatcaagccgacggcccatcagattctcgtaccgcgcccgacggcgggcaggatcggc
ggcaagccggtggtcggccgtgaactgctgtcgtggacgggggagttcctggcgaccatc
ctggggtcgtga
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