Candidatus Schneideria nysicola: KEC38_00220
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Entry
KEC38_00220 CDS
T07486
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sny
Candidatus Schneideria nysicola
Brite
KEGG Orthology (KO) [BR:
sny00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sny03032
]
KEC38_00220 (topA)
03400 DNA repair and recombination proteins [BR:
sny03400
]
KEC38_00220 (topA)
Enzymes [BR:
sny01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
KEC38_00220 (topA)
DNA replication proteins [BR:
sny03032
]
Prokaryotic type
DNA Topoisomerases
KEC38_00220 (topA)
DNA repair and recombination proteins [BR:
sny03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
KEC38_00220 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
TOP1_ZnF
CK_II_beta
Toprim_2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
UAJ66103
LinkDB
All DBs
Position
40216..42264
Genome browser
AA seq
682 aa
AA seq
DB search
MRYLVIVESPTKSKTISKYLGKNYIVKSTMGHVRDIPNKFIKNKSNFSNIGSNIGIEPYN
KWFAHYVILPDKQTIVNNIKKLSNTVNHIYLATDMDREGEAIAWHLKFILGEQNRYSRIL
FNEITEKSIKEAFNNPIDININKVHAQQTRRFMDRIVGYMISPLLWKKISPGLSAGRVQS
VAVRLIVDREREIRLFVPKENWKLYVRLETYDNHSILAKITHYNGTIFDPDNKEKIRSAT
IILKKSNFYVSNIKKQSILSKSLAPFTTSTLQQSASILLGYNVNKTMLIAQQLYELGYIS
YIRTDSTHINQDTIKMARNYIFNSFGQNYLPDNPNIYYNKRQCIQEAHEAIRPSDINITL
NHPKIVKFNHDMKNLYQLIWSRFIASQVVPAQYERTLLTIYTKNFQLLAEEYQLRFDGWT
RILPILSSVSTLKKRVDSSSNHDLSSIQSNSILKLNKVISKKTMSKPPLRYSEASLVKEL
EKRGIGRPSTYSAILSTIKKRGYVRLENKVFYTNKIGEIVNDRLVENFPELMNYNFTADM
EKTLDEIASNKKIWRNVLDNFFEKFCQQLHKAEKNSNLGGMCLNLINSTNIKCSFCDKKM
GLITINTGTFIQCLGYTRIPKICKNSQLLLIQKRKRKVLNPLLCPKCHIRMDDYLIDHTK
LYISICSNYPMCKEYFFEHSII
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgcgctatctagttattgtagaatcaccaacaaaatcaaaaactatttctaaatattta
ggaaaaaattatattgtaaaatctactatgggacatgttcgcgatattcctaataaattt
atcaaaaataaatcgaattttagtaatattggaagtaatattggaattgaaccttataat
aaatggtttgcacattatgtgattttacctgataaacaaacaattgtaaataatataaaa
aaactctctaataccgttaatcatatttatcttgctacagatatggatagagaaggtgaa
gctattgcttggcatttaaaatttatacttggtgagcaaaatagatatagtaggatacta
tttaatgaaattactgaaaaatctataaaagaagcttttaataatccgattgatattaat
attaataaggtccatgctcaacaaaccagacgttttatggatcgtatagttggatatatg
atttctcctttattatggaaaaaaatttctcctggattatctgctggaagagtacagtcg
gttgcagtaagattgatagtagatagagaaagagagattagattatttgttcctaaggaa
aactggaaactctatgtaagattagaaacttatgataatcattctattttagcaaaaata
actcattataatggtacaatatttgatcctgataataaagaaaaaattcgatcagctact
ataatacttaaaaagagtaatttttatgttagcaatataaagaaacaatctattttaagt
aaatccttagcacctttcactacctctaccttacaacaaagtgctagtattttattgggt
tataatgtgaataagaccatgttaatagcacaacaactatatgaacttggatatattagt
tatatacgtactgattctactcatattaatcaagataccataaaaatggcacgtaattat
atttttaattctttcggtcaaaattatctccctgataatcctaatatatattataataaa
agacaatgcatacaagaagcacacgaggctattcgaccatcagatattaatattacatta
aatcatcctaaaattgtaaaattcaatcatgatatgaaaaatctttatcaattaatttgg
tctagatttattgcttctcaagttgtacctgctcaatatgaaagaacattattaactatt
tatacaaaaaattttcagttacttgcagaggaatatcaattacgattcgatggatggact
agaattttacccatactctcttcagtatctactttaaaaaaaagagttgattcttcttct
aatcatgatttatcttcaatccaatcaaattctattttaaaattaaataaagtcatatcg
aaaaaaacaatgagcaaacctccattacgttatagtgaggcttccttagtgaaggaacta
gaaaaaagaggaattggtagaccttctacttatagtgctattctttcaaccataaaaaaa
aggggttatgttcgtttagaaaataaagtattttatactaataaaattggtgagattgta
aatgataggcttgttgaaaactttccagaattaatgaactataattttacggcagatatg
gagaagactctagatgaaatagcttcaaataaaaaaatttggcgcaatgtacttgataat
ttttttgaaaaattttgccaacagcttcacaaagcggaaaaaaattctaatttaggagga
atgtgtttaaatctaattaattcaactaatataaaatgctctttttgtgataaaaaaatg
ggattaattactattaatacagggacatttattcaatgtttaggatatacaagaattcca
aaaatttgcaaaaatagtcaattattattgattcaaaaaagaaaaagaaaagttttaaat
cctctattatgtccaaaatgtcatataagaatggacgattatttgatcgatcatacaaaa
ctatatatttctatatgtagtaattatcccatgtgtaaagaatacttttttgaacattcc
attatttga
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