Candidatus Schneideria nysicola: KEC38_01055
Help
Entry
KEC38_01055 CDS
T07486
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
sny
Candidatus Schneideria nysicola
Brite
KEGG Orthology (KO) [BR:
sny00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KEC38_01055 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sny03021
]
KEC38_01055 (rpoD)
Transcription machinery [BR:
sny03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KEC38_01055 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF2610
FlgN
Motif
Other DBs
NCBI-ProteinID:
UAJ66250
LinkDB
All DBs
Position
207207..209078
Genome browser
AA seq
623 aa
AA seq
DB search
MEHNSQSQFKLLVTRGKEQGYLTFSEVSDHLPDDVVDSDQIEDIIQMINDMGIQVMENTP
DTTDHLLLANEDADPTDEEETEVAVQQVLSGVSTEIGRTTDPIRMYMREMGTVELLTRKG
EIDIAKRIEDGINEVQSSVAEYPEAIGYLLEQYDKVEEGEVRLSDIISGFIDMNIEADNN
IIENINLPPTHINSSFTCPEIADDDHITDDENNDNTEDDSHVDPELARMKFIELRKQYEI
TRNTIKKNGRNHIKSMKEIIRLSEIFKLFRLVPKQFDYLVNKMHKMMERVRNQERLIMKL
CVEVSKMPKNTFILLFSGNESNDIWLKNALTMNKKWSEKLREVDKDIIHSLKKLREIEEE
TGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNI
GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRKM
LQETGREPTPEELSEKMLIPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTNLEL
PLESATSESLRSATHEVLESLTTREAKVLKMRFGIDMNTDHTLEEVGKQFDVTRERIRQI
EAKALRKLRHPSRSELLRSFLDD
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggaacacaattcccaatcacaatttaaattacttgttacacgtggtaaagaacaagga
tatttaacattttcagaagtaagtgatcatcttccagatgatgttgtggatagtgatcaa
attgaagatattattcaaatgatcaatgatatgggtattcaagtcatggaaaacactcca
gatactactgatcatttattattagcaaatgaagatgctgatcctaccgatgaagaagaa
acagaagtagccgtacaacaagttttatccggtgttagtactgaaataggtcgtactact
gatcctatacgtatgtatatgcgtgaaatgggtactgtggaattgttaacacggaaaggg
gaaattgatatagcaaaacgtatagaagacggtattaatgaagtacaatcttcagttgct
gagtatcctgaagctattggatacttattagaacaatatgacaaggttgaagaaggtgaa
gtacgtttatctgatataattagtggtttcattgatatgaatatagaagcagacaataat
ataatagaaaatattaacttaccaccaactcatattaattctagttttacttgtcccgaa
attgccgatgacgatcatatcaccgatgatgagaacaatgataatactgaggatgatagt
catgttgatcctgaattagcaagaatgaaatttatagaattacgcaaacaatatgaaatt
actcgaaataccatcaaaaaaaatggacgtaatcatattaaatcaatgaaagaaattatc
agattatctgaaatatttaaattgtttcgtcttgttccgaaacaattcgattatttagta
aataaaatgcataaaatgatggaaagagtacgaaatcaagaacgtttaattatgaaatta
tgtgttgaagttagtaaaatgccgaaaaatacttttattttattgttttcaggaaatgaa
tctaacgatatttggttaaaaaatgccctaactatgaataaaaagtggtcggaaaaactc
cgtgaagtagataaagatattatacatagtttaaaaaaacttcgtgaaatagaagaagaa
acaggattaactattgaacaagtaaaagatattaaccgccgtatgtctattggagaagct
aaggcgcgtcgtgctaagaaagagatggttgaagctaatttacgtttagtgatttctatt
gcgaaaaaatatacaaatagaggcttacaatttttagatcttattcaagaagggaatata
ggattgatgaaagcagtagataaattcgaatacagacgaggatataaattttctacatat
gctacatggtggatacgtcaagctattacacgttctatcgctgatcaagctcgtactatt
cgtattcctgtacatatgattgaaactattaataaattaaatcgtatatctagaaagatg
ctacaggaaacaggacgtgaaccaactccagaagaactttctgaaaaaatgctaatacca
gaggataaaattcgaaaagtcttaaaaattgctaaagaacctatttctatggaaaccccg
attggagatgatgaagattcacatcttggagattttatagaagatactaacttagaatta
ccattagaatcagcaacatccgagagtttgcgttcagcaactcatgaagtattagaaagt
cttaccacacgtgaagccaaagtattgaaaatgcgttttggtattgatatgaataccgat
catacattggaagaagtaggtaaacaatttgatgtaacacgtgaaagaataagacagata
gaagcaaaagcactaagaaaactacgacacccaagtcgttcagaattattacgtagtttt
ttagatgattaa
DBGET
integrated database retrieval system
