Streptomyces nigra: DC008_14070
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Entry
DC008_14070 CDS
T05839
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
snz
Streptomyces nigra
Pathway
snz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
snz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DC008_14070 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snz03400
]
DC008_14070 (mfd)
Enzymes [BR:
snz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DC008_14070 (mfd)
DNA repair and recombination proteins [BR:
snz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DC008_14070 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
UB2H
MFD_D3
4HBT_3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AWE50735
UniProt:
A0A2S1IDS0
LinkDB
All DBs
Position
complement(3074874..3078404)
Genome browser
AA seq
1176 aa
AA seq
DB search
MSLHGLLDAVVKDTALAEAITAAADGNRMHVDLVGPPAARPFAIAALARESGRTVLAVTA
TGREAEDLAAALRSLLPEQGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVALRSGQTADLNAVVDALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRIEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDEVRERARVLAEQHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGSMAV
VADPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLWSIADVRDRARELDMM
WWSVSPFAADDELDADTLKLGMRAPEAYRGDTAKALADTKGWLADGWRTVFVTEGHGPAA
RTVEVLGGEGVPARLTIDLDEISPSVVHVACGCIDYGFVDPALGLAVLTETDLTGQKAAG
REGARMPARRRKTIDPLTLEAGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFGGDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVNVRALSRFQTDTEARA
VLEGLRDGSVDVVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRASLEGGV
EEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANTEEDVKAVREELVDRYGKLP
EPVENLLLVAGLRMLARACGVGEVVLQGNNIRFAPVELRESQELRLKRLYPGTVIKPSVH
QVLVPRPKTAKVGGKPLVGRELLGWVGEFLTSVLGS
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagtctgcacggtctgctcgacgccgtagtcaaggacaccgccctggcggaagcgatc
acggcggccgcggacggcaaccgcatgcacgtcgacctggtcggccccccggcggcccgc
cccttcgcgatcgcggccctcgcgcgcgagtccggccgcaccgtcctcgccgtcaccgcg
accggccgggaggccgaggacctcgcggcggcgctgcgctccctgctgcccgagcagggc
gtcgtggagtacccctcctgggagaccctgccccacgagcgcctcagcccccgcagcgac
accgtgggccgccgcctggccgtgctgcgccggctcgcccacccccggcccgacgacccg
gagaccggaccggtctccgtggtggtggcccccgtgcgctccgtcctccagccgcaggtc
aagggcctcggcgacctggagcccgtcgcgctgcgcagcggtcagaccgccgatctgaac
gccgtggtggacgccctcgcggccgccgcctacgcgcgcgtggagctcgtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctcgacgtcttcccgcccaccgaggaacacccc
ctgcgcatcgagttctggggcgacgacgtcgaggagatccggtacttcaaggtcgccgac
cagcgctctctggaggtcgccgagcacggcctgtgggcgccgccctgccgcgagctgctg
ctcaccgacgaggtgcgcgagcgggcgcgcgtgctcgccgagcagcacccggagctgggc
gagctgctcggcaagatcgccgagggcatcgccgtcgagggcatggagtccctggcgccg
gtcctcgtcgacgacatggagctgctgctcgacgtcctgcccaaggggtccatggccgtc
gtcgccgaccccgagcgggtccgcacccgcgccgccgacctggtggcgacctcgcaggag
ttcctgcaggcgtcctgggcggccaccgcgggcggtggcgaggcccccatcgacgtcggc
gcggcctccctgtggtccatcgcggacgtccgcgaccgggcccgcgagctggacatgatg
tggtggtcggtgtcgccgttcgccgccgacgacgagctcgacgcggacaccctcaagctg
ggcatgcgcgcccccgaggcctaccgcggcgacaccgcgaaggcgctggccgacaccaag
ggctggctcgccgacggctggcgcacggtcttcgtgaccgagggccacggcccggcggcc
cgcaccgtcgaggtgctcggcggcgagggcgtcccggcccgtctgaccatcgacctggac
gagatctccccgtccgtcgtgcacgtcgcctgcggctgtatcgactacggcttcgtggac
cccgcgctcggcctggccgtcctcaccgagaccgacctgaccgggcagaaggcggccggc
cgcgagggcgcccggatgccggcccgccgccgcaagaccatcgacccgctcaccctggag
gcgggcgactacatcgtccacgagcagcacggcgtcggccggtacatcgagatggtgcag
cgcaccgtgcagggcgcgacccgcgagtacctggtcgtggagtacgcccccgccaagcgc
ggccagcccggcgaccggctctacatccccaccgaccagctggagcagatcaccaagtac
gtcggcggcgaggcgcccaccctgcaccgcctcggcggcgccgactggacgaagacgaag
gcccgcgcgaagaaggccgtgaaggagatcgcggccgacctgatcaagctgtacagcgcg
cgcatggccgcgccgggccacgccttcggcggcgacaccccgtggcagcgcgagcttgag
gacgccttcccgtacgccgagaccccggaccagctgacgacgatcgccgaggtcaaggag
gacatggagaagtcggtcccgatggaccgcctgatctgcggcgacgtcggctacggcaag
acggagatcgcggtgcgcgccgccttcaaggcggtccaggacggcaagcaggtcgccgtg
ctcgtgccgacgaccctgctggtccagcaacacttcggcacgttctccgagcgctactcg
cagttcccggtcaacgtgcgcgcgctgtcccgcttccagaccgacacggaggcgagggcg
gtcctggaggggctgcgcgacggttcggtggacgtcgtcatcggcacccaccggctgttc
tcgtccgagaccaagttcaaggacctcggtctggtcatcgtcgacgaggagcagcgcttc
ggcgtcgagcacaaggagcagctgaagaagctgcgcgccaacgtcgacgtcctgacgatg
tccgcgaccccgatcccgagaacgctggagatggcggtcaccggcatccgcgagatgtcc
acgatcaccaccccgccggaggagcggcacccggtgctcaccttcgtcggaccgtacgag
gagaagcagatcggcgcggcgatccgccgtgagctgctgcgcgagggccaggtcttctac
atccacaaccgcgtcgagtcgatcgaccgggccgccgcccggctgcgcgagatcgtcccc
gaggcgcggatcgcgaccgcccacgggcagatgtcggagcaggcgctggagcaggtcgtg
gtcgacttctgggagaagaagttcgacgtcctcgtctccacgacgatcgtcgagtccggc
atcgacatctccaacgccaacaccctgatcgtggagcgcggcgacaacttcggcctctcc
cagctgcaccagctgcgcggccgcgtcggccggggccgcgagcgcggctacgcctacttc
ctgtacccgccggagaagccgctcacggagaccgcgcacgaacggctcgccaccatcgcc
cagcacaccgagatgggcgcgggcatgtacgtggccatgaaggacctggagatccgcggc
gccggaaacctgctgggcggcgagcagtccgggcacatcgcgggcgtcggcttcgacctc
tacgtccgcatggtcggcgaggcggtggccgactaccgcgcctcgctggagggcggcgtg
gaggaggagccgccgctggaggtcaagatcgagctccccgtcgacgcgcacgtcccgcac
gactacgcgcccggcgagcggctgcgcctccaggcgtaccgcgccatcgcctccgccaac
acggaggaggacgtcaaggccgtccgcgaggaactcgtcgaccgctacggcaagttgccc
gagccggtggagaaccttctgctggtggccgggctgcggatgctggcgcgtgcgtgcggc
gtcggcgaggtcgtgctgcagggcaacaacatccggttcgcaccggtggagttgcgcgag
tcgcaggagctgcggctcaagcggctgtacccgggcacggtcatcaagccgtcggtgcac
caggtgctggtgccgcgcccgaagaccgcgaaggtcggcggaaagccgctggtcgggcgg
gagttgctgggctgggtcggggagttcctcacttcggtgctggggtcctga
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