Solibacillus sp. R5-41: CSE16_07755
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Entry
CSE16_07755 CDS
T05144
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sob
Solibacillus sp. R5-41
Pathway
sob03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CSE16_07755 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sob03400
]
CSE16_07755 (ligD)
Enzymes [BR:
sob01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CSE16_07755 (ligD)
DNA repair and recombination proteins [BR:
sob03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CSE16_07755 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
ATP39952
UniProt:
A0A2D1SS74
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All DBs
Position
1665518..1667347
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AA seq
609 aa
AA seq
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MKPMLLTDSNEIPMGDEWLYETKYDGFRCTLEWVEKVPILKSRNDNELNKMFPEIIAFCN
EIYESIKAHLPLFLDGELVYLVNNIQSNFSIVQQRGRMRNKEVITEHARKFPCHYVVFDL
LKYRGEDQFNRYITTRKQILDKLFRGVQLPIKINYENTKRLQSIDVFVESEDLWNSIKIY
NGEGMIAKKKMSKWLSDTRSKNWLKIKNWRFVSVIVFKYDTGNGYFSGGVYQDDNLIEIV
TFKHGLREEEMKTLITFFQSNGRKVNETISVEPSVCVDIACIDFDGSKLREPQFHVFRFD
LNPDQCIWQQMQRQLQPIPEAVQVTHPNKPVWPIIGINKDEYLLYLQTVAPHMMPFLRDR
LLTVIRFPHGALGESFYQKNSPDNIPEFVSTEHVEGTNFILCNNIETLLWLGNQLALEFH
IPFQTMNTEKPSEIVFDLDPPSVNEFDLAISAAVKMKAIFDQFKLKSFIKTSGGKGMQIY
IPLPIDTFTYEETGIFTEFVCNFLVKQYPQWFTTERLKKNRGNKLYLDYVQHREGKTIIA
PYSTRGNEKGLIATPLNWDEVNDSLRPEKFTINAVLERIRVVGNPFTNFRDIGELQDFKS
VLNQLEGIR
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgaaacctatgttgttaacagattccaacgaaatccctatgggtgatgaatggctttat
gaaaccaaatacgatggctttcgatgtacgttagagtgggtagaaaaagtgccaatccta
aaaagtagaaacgataatgagttaaataaaatgtttcctgagattatagctttttgtaat
gaaatatacgaatcgattaaagctcatttacctttattcttagatggggaacttgtttat
ttagtaaataatattcaaagtaacttttctattgttcagcaaagaggtcggatgcgtaac
aaggaagttattacagaacacgctagaaaatttccttgtcactatgtagtattcgacctt
ctgaaatatagaggtgaagatcaatttaatcgttatataacgactcgtaagcagatacta
gataagctttttagaggtgtccaacttccaataaaaattaactatgaaaatacaaagcga
cttcagtcaattgacgtatttgtggaaagtgaagacttatggaatagtattaaaatttac
aatggagaaggaatgatcgctaagaaaaagatgagtaaatggctgagtgatactcggtca
aaaaattggttgaagataaagaattggcgattcgtttcggtgattgtgttcaagtatgac
acaggaaatggctattttagtggtggtgtttaccaagatgataatttgattgagattgtc
acatttaaacacggcttacgggaagaagagatgaaaacacttattactttctttcagtcc
aatggaagaaaagtaaatgaaacaatttcagttgaaccatcagtttgtgtcgatattgca
tgcattgattttgatggaagtaaattaagagaaccacaattccatgtatttaggtttgat
ttgaatcccgaccaatgtatttggcaacaaatgcaacgacagcttcaaccaattccagaa
gcggtacaagtaactcatccaaacaaacctgtttggccaataataggtatcaataaagac
gaatatttattatatttgcaaaccgtagccccacatatgatgcctttcttgcgtgaccgt
ctattaacggttattcgatttcctcatggtgcactaggagaaagtttttatcagaaaaat
agtccagacaacattccggaatttgtttcaactgaacatgtggagggtactaattttatc
ctttgtaataatatcgaaacccttttgtggctagggaatcaacttgcattagagtttcac
ataccgtttcaaactatgaatactgagaagccttccgaaattgtatttgatttagatcca
ccgtcagttaatgaatttgacttagctatcagtgctgctgtaaaaatgaaggctatattt
gatcaatttaagttgaaatcttttataaaaacctcgggagggaaagggatgcaaatatat
attccgttacctattgatacatttacttatgaagaaacagggattttcactgagtttgtc
tgcaattttttagtaaagcagtatccacaatggtttaccacagaacgcctaaagaaaaat
cgaggtaataaattatatttagactatgtacagcatcgggagggtaagacaattattgca
ccttattcgacacgcggaaacgaaaaaggactaatagcaacgccattaaattgggatgag
gtgaatgattccttaagaccagaaaaatttacaataaatgctgtattggaacgaattaga
gttgtaggtaatccatttacaaacttccgagatattggggaattacaggactttaaatca
gttcttaatcagctagaagggataagataa
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