Solenopsis invicta (red fire ant): 105195218
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Entry
105195218 CDS
T03916
Name
(RefSeq) uncharacterized protein LOC105195218 isoform X3
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105195218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
soc03021
]
105195218
03019 Messenger RNA biogenesis [BR:
soc03019
]
105195218
Transcription machinery [BR:
soc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105195218
Messenger RNA biogenesis [BR:
soc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
105195218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pcf11_helical
CID
CFIA_Pcf11
Motif
Other DBs
NCBI-GeneID:
105195218
NCBI-ProteinID:
XP_011158849
LinkDB
All DBs
Position
5:complement(23516232..23528319)
Genome browser
AA seq
1894 aa
AA seq
DB search
MFASTKSKEVADEYISSLSDLTINSKPLINMLTMLAEDNIEHASAIVQAVESHLLKVRSD
IKLPVLYLIDSIVKNVNGDYLNLFTQNIVNTFCGVFEKVDENTRASMWKLRQTWNDVFPP
KKLFSLDVRVQSIDPAWPITAPSTSIPSGSIHVNPRFLSMPQQTATSIVPPVKLPPGEPV
TTSEAAMREQLLKKQRELLELQKKKIELELLQAKASLEQQQRQLDKQAGSLKTEVVVSTA
HIASTTETTTQAKPVAPVVPNQTPKQVAKQFPAAAASLLKNAGTTSGPRIAPASSIAVAS
AKPVSRDPRLKPTPASQDVAVPTIDPRQRPGTSPKEGPRNEGQAQQVANTIVTSNQLKQQ
ILSKSAVTIKPPANPAGSDNPTLLNVINNNNADNNSNNKNFSSNINKDAVSHRTSQKKDP
RLNSNSSGNLNGNNSKNSQSLSVCSNNSSSVLSGNNRGSGGSDINKSKDSKSTNSRGSSS
SLIDKSSTSSKSSHRKLGNKSRSKQPQTPNKIPKVDRDSSPIRSKSREKDSGDSSSPSSR
TSPQSSFQASKSRKKNTKSRKRSPSPPYRIPRRNDAKSSSSLNNSGGVTEEEQSGSLIVS
PPHPPAFKEIRPNARQRNYVRRNKDDSLSPERSPANAGNNQIAVEPTLESSSKDEDLRAP
LSLPGTAVSIPEKKEDLDLRVLPSVNTNKRRSEECVETPLKKTKAEKFDALFGNEDVDLR
TLTHPNAGRPPTPPPPVISGEDGKDGWAKLKTPTKNDRDKQVNNTDDKRERDRNRDRLGR
LRLYNKLPDDPKERRRTLSNEEQDSRPGRRGRENDKPERNDDRNIEIIMKQAAEQLNQGS
ITKTQYNTLIQEVLHMSEDRKLRAAQRKEKEAGTVIWEKGINMDMSGPGDRNATNFSPSN
DKEMMRNKDHPIPRNPNGPRWQNQPWQQPWAHPPGPPFGGPQGHFNSDMRPVGPWQNPRH
FGPMRPDFQYHSGFNHSMGPNPRLGPGMMGPMGPNGPIMSNLLPNGPMGPMGPMPNSAMA
MGCHPAMMMNNGPMTNLMPNMPPLASNRNVSPNTSAKYDLEDNDQGYGNSMLKNPGSHSR
ELPPPDSKLLAEISRDTMKSINIDNIPREIRYYGQIGVVFMNWDDPREIGFQDGIRRILI
DDKDTITCAFNDQYKEFMYEGEVHRIKLGAPTRELYVDDRWYECYFGGMPITIELGGKKV
SVKLEGPPPQVKIGTVKRTDLVVAKINLIINARNMVPVFLDAKPQIFEIEGKPHTLEFTD
ALQTVLLNGRPFKVEFGGLPKPIIVRDKKHFIRFSVLPRGVRAGHVKITGMRGEGPIESP
PPVTPLITQKPKIDTTPTKQSPTRLPPVEHESTSQDGLDFTSTSKPDLQLDILSSVLPSA
MAPSSGLSYQAEPVENPPAPAPTLPLNMSELFQRLVETGIVPNLTEQKKQEEEEKKEPEI
TPVSFDKPETLKIKQPAIATALYSGMQCSSCGARFAPELATRYSHHLDWHFRQNRRERDS
ARKAHSRPWYYDVSDWIQFEEIEDLEDRAQSWFETEKQTAETEGMATDDSPQETLQPSVP
TGSDEDSRCQVCHDAFEQFYNEEKEEWHLRPAVNYEGKNYHPLCLEDYKRALEKSALTLE
EAASEIEENKQECSEETPGDETKQQESEETLNKEQSESVDNQVNQVEVNMMKLLDSIAEN
KEESVENAEMENSEVSQDDTEKKENTEGLNEDNTEGVVEDAEKDASTTNKEEESSGEGVS
EPFENIKIKEEPLDDIDEQPDSEMFDFANVEVKEEPMEPEPDPEQIVNETGTVDTTYAAV
KSSIDGNVELDSTPAAIPAAPSRIKINITKPLNINKDSEENKEKEKVAAETPVEENAEQP
LVAASIKPSLQGRKLSNLPPVEKGQELSGLCSIM
NT seq
5685 nt
NT seq
+upstream
nt +downstream
nt
atgttcgcgtcgacaaagtccaaagaagtcgcggatgagtacatctcatctctatctgat
ttaacaattaacagtaagccgcttatcaacatgctcaccatgctggctgaagataatatt
gaacatgcatcagcgattgtacaagccgtcgagtctcatctactcaaggtgagaagtgac
atcaagttaccagtactctatctcatcgactcgattgtcaagaatgtgaatggtgactat
ctgaacctgtttacgcaaaacatagtaaacacattttgcggagtatttgagaaggttgat
gagaacacgagagccagcatgtggaagttgcgacaaacgtggaacgatgtatttccacca
aagaaattattttcattagatgtacgggtacaaagtatagatcctgcatggccaatcact
gccccatccactagcatcccttcaggatctatacatgtaaacccaagatttctttcaatg
cctcaacaaaccgcaacgtcgattgttccgcccgttaaattaccaccaggagaaccggta
acgacttcagaagcagccatgagagaacagctgctaaagaagcaacgagaattgttagaa
ttacaaaagaagaaaatcgagttagaattgctgcaggctaaagcgagtttagagcaacag
cagaggcagcttgacaaacaagctggcagcttaaagacagaagtggttgtgtccactgca
catattgcgtcaactacggagactacaacgcaggcgaaacctgtagcacctgtagtgcca
aatcaaactccaaaacaagtagcaaaacaatttccagcagcagcagcatcacttttaaag
aacgcaggaacaaccagcggtccacgaatcgcaccagctagtagtattgcagtagcgtcg
gctaaaccagtctcgcgagatccacgtttgaaacccactcctgcgagtcaggatgtggca
gtaccaacgatagatccacgacaacggccgggtacgagtccgaaagaaggtccgcggaat
gaaggtcaagcgcagcaagtggcgaatacaattgtaacttcgaaccaattaaaacagcag
atactttcaaaatcggctgtaactatcaagcctccggcaaatcctgccggatccgataat
ccgacgttattaaacgttattaataacaataatgctgataataatagcaataataaaaat
ttcagtagtaatataaataaagatgctgtctcgcatcgaacaagtcaaaaaaaagaccct
cgattaaatagtaatagtagtggcaacctaaacggtaacaactccaaaaacagccagagt
ttatcggtttgcagtaataactcgtcttcagtattatcagggaataatcgaggaagtgga
ggcagcgatatcaacaaatcgaaagactcgaagagcacaaactcacgtggctcttcctcg
tctttgatcgacaagtcttccacttcctccaagtcatcgcataggaaattaggcaataag
tcgcgatcgaaacagcctcaaactccgaataagattccgaaagttgacagagattcgagt
ccgattagatcaaaatctcgtgagaaagacagcggagatagttcatcaccgtcctcacgt
acctctccacaatcctctttccaagcctctaaaagccgcaagaagaacacgaagtcgaga
aagcgtagtccaagtcctccgtatagaattccaaggcgtaacgacgcgaaatcgagttcg
agcttaaataattccggtggtgttactgaggaggagcaatctggttcactgatagtatct
cctcctcatccgcccgcattcaaagagatcaggccgaacgctagacagagaaattatgta
agacgaaataaagacgacagtcttagtccggaacgttctccagccaacgctggaaataat
caaatcgctgtcgagccgacattggaatcttccagcaaagacgaggatctcagagcacca
ttgtctctacctggaacagctgtttccatacctgaaaagaaagaagatttagatctacga
gtattaccatctgttaacactaacaaaagacgcagtgaggaatgtgtagaaactccactg
aagaaaactaaggctgagaaatttgacgcattattcggtaatgaagacgtagatttacgc
acattgacgcatcctaatgccggtcgacctccgacacctccaccacctgtgatttctggg
gaggatggaaaagatggctgggcaaaattaaagacgcccacaaagaatgatagagacaag
caagttaataataccgatgataagcgtgaaagggatcgtaatagggatagattaggacgt
ctgaggctttataataagctcccggatgatcctaaggaaagaaggagaaccttgtcaaat
gaggaacaagattctagaccaggacgtagaggccgggagaatgataaacctgagagaaat
gacgatagaaatattgagataattatgaagcaagccgccgaacaattgaatcaggggtcg
atcacgaagacgcagtacaacaccctaatacaagaggtactgcatatgagcgaggatcga
aaattgcgagccgcgcagcgtaaggagaaggaggctggtactgtgatatgggagaagggt
atcaacatggatatgtccggtcccggggatcgcaatgcgacgaatttcagcccgtccaac
gacaaggagatgatgcggaacaaagatcatccgataccgcgaaatccgaacggtccgaga
tggcagaatcagccatggcaacaaccgtgggcgcatcccccgggaccgcctttcggcggg
ccgcaaggacatttcaattcggacatgagacctgtcggaccttggcagaatcctcgacat
tttgggccgatgcggccagatttccagtatcatagcggcttcaatcacagtatgggaccc
aatccgcgtttaggacctggtatgatgggtccgatgggtccaaatgggccgattatgtcg
aatcttttgccgaacggcccaatgggaccgatggggcctatgcccaactccgctatggca
atgggatgccatcctgcgatgatgatgaacaatggacccatgaccaatcttatgccaaat
atgccacctctagcgtccaatagaaatgtatcaccgaatacatctgcgaagtacgacctc
gaggataatgatcagggatacggcaactccatgttaaagaatccgggctcacatagtcgc
gaattgccaccgccggattcgaaactgttagccgagatctcgagagacaccatgaaatct
ataaatattgataatataccacgggagattcgctattacgggcaaatcggtgtagtgttt
atgaactgggacgatccacgggagattggtttccaggacggtataagaagaatactaatt
gacgataaagatactattacttgcgcatttaacgatcagtataaggaatttatgtacgag
ggagaagtacatagaatcaaattgggtgcacccacacgagaattgtatgtcgatgatcgg
tggtacgaatgttattttggtggtatgccgataacaatcgaactcggcggaaaaaaagtc
agcgtgaaattggagggtcctccgccacaagtcaagatcggtactgtgaagcgtaccgat
cttgtggttgcgaaaattaatctcattatcaatgcgcgcaatatggtgccggtgtttttg
gacgcaaaaccacagatattcgaaatcgaaggaaaacctcatacgttggaatttacggac
gcgttgcagacagttcttttaaatggacgaccgtttaaagtcgaattcggaggcttaccc
aaacctattattgttagagacaaaaagcattttatcaggttttcagtactgcctagagga
gtgcgtgctggtcatgttaagattactggaatgagaggcgaaggccccatcgagtcacca
ccgccagtgacgcctctaataacgcagaaaccgaagatagacacaactcctaccaagcaa
tcgccaactcgattgccccctgtggaacacgaatccacgtcgcaggatggtctagatttt
acttctacttcaaaaccagatctgcaattagatatattatcgtcagttttgccatcggct
atggcaccatcatctggtttgtcatatcaagccgaacctgtggaaaatccgcccgcacca
gcaccgacattgccattgaacatgagtgaattattccagagattggtcgagactggtatc
gttcccaatctcacagaacaaaagaaacaagaggaggaagagaagaaagagcccgagatt
actccagtctcctttgataaaccagaaactctgaaaattaaacagccagcgattgcaaca
gccttgtatagtggcatgcaatgtagttcttgtggcgctagatttgcgcctgaattagcc
actcgttatagccatcatttagattggcactttagacagaacaggcgtgaacgagactct
gcaagaaaagcgcattcccgaccgtggtattacgatgtcagcgattggatacagtttgag
gagattgaagacttggaggatagagcgcaaagttggtttgagactgagaaacagacggcg
gaaacggaaggtatggccaccgatgattcgcctcaggaaacattacagcctagcgtacca
actggtagcgacgaggattcgcgatgccaagtatgtcatgacgcatttgaacagttctat
aatgaggaaaaagaggagtggcatttgcgaccggcggttaattacgagggcaaaaattac
catccgctctgtctagaggattacaagagagcattagaaaaatcagctttgacgcttgaa
gaggcagcttcggaaattgaggaaaataagcaagaatgttccgaagagacgcccggagat
gaaactaagcagcaagaatctgaagaaacattgaataaagagcagtctgaatctgtggat
aaccaagtaaaccaagtggaagtgaatatgatgaaactcttagattctattgctgagaac
aaggaagagtctgttgagaatgctgaaatggagaattctgaagtttcgcaggatgatacg
gaaaagaaagagaatacagaaggccttaacgaagacaatacagaaggtgttgtggaagat
gccgagaaagacgcatctacgacaaataaagaggaagaatcttcgggcgaaggtgtaagt
gaaccttttgaaaatattaaaattaaagaggagccattagacgatattgacgagcaaccc
gacagcgaaatgttcgatttcgccaacgtagaagtaaaagaagagcctatggaacctgaa
ccagatcccgaacaaatagtgaatgaaacaggcacagtcgatacaacgtacgccgcagtg
aaaagttccatcgacggaaacgtagaattggactctacgccggcagccattcccgcagct
ccttcgcgaattaagatcaatattactaaaccactgaacattaacaaagattcggaagag
aataaagagaaggagaaagtggcagccgaaacgcctgtagaggaaaatgcggaacaacca
ttagtagcagcttccattaagccgagtttacagggtaggaagctatcgaacttacctcct
gtagaaaaaggacaagaattatcaggactttgttccatcatgtaa
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integrated database retrieval system
