Spinacia oleracea (spinach): 110774872
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Entry
110774872 CDS
T05137
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03013
Nucleocytoplasmic transport
soe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110774872
09122 Translation
03013 Nucleocytoplasmic transport
110774872
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110774872
03041 Spliceosome [BR:
soe03041
]
110774872
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
110774872
Spliceosome [BR:
soe03041
]
Complex C
Other components
EJC/TREX
110774872
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
110774872
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Motif
Other DBs
NCBI-GeneID:
110774872
NCBI-ProteinID:
XP_021835159
UniProt:
A0A9R0HRL6
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Position
1:complement(123532632..123550169)
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AA seq
603 aa
AA seq
DB search
MEIFRKALLNLEPPEKFALQTVQEAIKPQRQTKLVLDENQLLENILRTLLQELVSCAVQS
GDPTMHYGQSIADGDNANGQIPRLLDIVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKD
IFAYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSE
RSAVNIKGVFNTSNETTFEKEAPKGISTDFNFYKTFWSLQEYFCNPPSLTVNPTKWHRFT
SSLTVVLNTFEAQPLSDEEGNANNLEEEGAAVNIKYLTSSKLMGLELKDPSFRRHVLVQC
LILFDYVKAPGKSDKDLPSEAMKEEIKTSEERVKKLLEVTPPKGKEFLSSIEHILEREKN
WVWWKRDGCPPFEKQPAEKKVDGTKKRRPRWRLGNKELSQLWKWSDQNPNALTDPERVRT
PAVVDYWKPMADDMDPSAGIEAEYHHKNKKVYCWKGLRLSARQDLEGFSRFTEFGIEGVV
PLELLPAELRSKYQAKPNEKSKRAKKSGTKGSVPSSEDNQGTALECEMDGEGGQNDLEAP
SAAMDLDSTPITGNNSQAGTPTQDELEKQNSESPDAQEAGELDAEEDVEPGLIDGETDAD
VDL
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggagatttttaggaaagccttgttaaatttggagccccccgaaaaatttgctcttcaa
actgttcaggaagccattaaaccccagaggcaaacaaagttagttctggatgaaaatcag
ttgctagaaaacattctacggacgttactccaagagttggtgtcgtgtgcagtacagtct
ggagatccaaccatgcattatggccaatccattgctgacggagataatgcaaacggtcaa
attcctcgccttctggatatcgtattgtatctctgtgagaaggagcacgtggagggtggc
atgatatttcagctattggaagatttgacagaaatgtctaccatgaagaactgcaaagat
atttttgcttacattgagagcaagcaagacatacttggaaagcaagaactgtttgctcgt
ggcaaacttgtgatgctgaggacatgcaatcaactgcttcgtcgtttgtcaaaggcaaat
gatgtggtattttgtggacgaattcttatgtttctggcacattttttcccgctatcggag
cgctcagctgtgaatatcaagggagttttcaatacatccaatgaaacaacgtttgagaaa
gaagcacctaaaggaatttctactgatttcaacttctacaagacgttctggagtttacag
gagtatttttgcaatcctccatccttgactgttaatcctacgaaatggcacagatttaca
tcaagcttaacggttgtactcaatacctttgaggctcaacccttgagtgatgaagaggga
aatgctaataatcttgaagaagagggggcagctgtcaatatcaaatatcttaccagtagt
aaattaatgggtttggagctgaaagatcctagtttccggcgtcatgttctggtacaatgc
ttgatattgttcgactatgtgaaggctcctggaaagagcgacaaagatttgccatcagaa
gcaatgaaagaagaaataaagacctctgaggagcgtgtaaagaagcttcttgaagtgaca
cctccgaaagggaaagagtttctcagcagcattgagcatattttagaacgtgaaaaaaat
tgggtgtggtggaagcgtgatggttgcccaccttttgaaaaacaacccgcggagaagaag
gtagatggtacaaaaaaacgtcggccaaggtggagattagggaacaaagaactttcccag
ttgtggaaatggtctgatcagaatccgaatgctctcactgatccggagcgagttcgtact
cctgctgtcgtagattattggaagccaatggctgacgatatggatccatctgctggtata
gaagctgagtatcatcacaagaataagaaggtttattgctggaaaggtcttcggttatct
gctcgacaggacttggaaggtttttctaggttcactgaatttggtattgaaggggttgtg
ccactggaactcctgcctgctgaactaaggtccaaatatcaggcaaagccaaatgaaaaa
tctaaacgagcgaagaagtctggaactaagggttctgtaccttcatctgaagataatcag
ggcacagccttggagtgtgagatggacggtgaaggaggccaaaacgatcttgaagctcca
tcagctgcaatggacttggattcaacacctattactggaaataattctcaagctggcacc
ccaacacaagatgagcttgaaaagcaaaattctgaatccccagatgcacaagaagctggc
gaacttgacgccgaagaagatgttgaaccggggttgattgatggagagacagatgctgat
gttgatctatag
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