Spinacia oleracea (spinach): 110791949
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Entry
110791949 CDS
T05137
Name
(RefSeq) general transcription factor IIH subunit 2 isoform X1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03022
Basal transcription factors
soe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110791949
09124 Replication and repair
03420 Nucleotide excision repair
110791949
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
soe03021
]
110791949
03400 DNA repair and recombination proteins [BR:
soe03400
]
110791949
Transcription machinery [BR:
soe03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
110791949
DNA repair and recombination proteins [BR:
soe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
110791949
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
Tfb4
Motif
Other DBs
NCBI-GeneID:
110791949
NCBI-ProteinID:
XP_021852410
UniProt:
A0A9R0IN94
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All DBs
Position
1:25669302..25688508
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AA seq
428 aa
AA seq
DB search
MNSIEHRAVSNSRGRRLNRDEDEDDEDEDNDMSAWEKAYTDERSWESLQEDESGLLRPID
NTSIYHAQYRRRIRSISSTSTSARIQKGLIRYIYVVMDFSRAAAEMDFKPSRMAVVAKHV
EAFVREFFDQNPLSQIGLVAIKDGVSHCLTDMGGSPESHIKALMKKLECSGDASLQNALE
LVHECLNQIPSYGHREVIILYSALSTCDPGDIMETIQKCKKSKIRCSILGLSAEMFICKH
ICQETGGSYAIALDEFHLKELLLEHAPPPPAIAEYAIANLIKMGFPQRAAEGVVSICVCH
KEAKVGAGYTCPKCKARVCELPTECRICGLTLVSSPHLARSYHHLFPITPFDEVSFPNRK
IAGQKSYETCFGCMHNLMDPGTGSGYCVTCPKCKKYFCLDCDIYIHESLHNCPGCESLRH
SNSINAGG
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcattgaacatagggcggttagcaatagcagaggaagacgacttaaccgagat
gaagatgaggatgatgaagatgaagataatgatatgtctgcatgggagaaagcctatacc
gatgagagatcatgggaatctttgcaagaagatgaatctgggctacttcgtccaattgat
aatacgtcgatctaccatgctcaatatcgtcggcgtattcgttccatctcgtctacctca
acctctgctcgaattcagaaaggccttattcgctatatctatgtcgtcatggatttctca
agggcagcagcggagatggattttaaaccaagcagaatggccgttgttgccaaacatgta
gaggcttttgtaagggagttttttgaccaaaatccacttagtcaaattggtcttgtggca
attaaagacggtgtttctcattgcctaacggatatgggtggtagcccggagtctcatatt
aaggctttgatgaagaagttggagtgttcaggggatgcgtctttacagaatgccttagaa
cttgttcatgaatgcttgaatcaaattccatcatatggccaccgtgaagttataattttg
tattcggctcttagtacctgtgatccaggtgacataatggagactattcaaaagtgcaag
aagtcgaagattaggtgttcaatactgggtctttctgcagagatgtttatttgcaaacac
atatgccaggaaacaggtggatcatatgctattgccttggatgagttccatctgaaagag
ttgttgttggaacatgcacctcctcctccagccatcgctgagtatgcaattgctaacttg
atcaagatgggttttccacaaagagcagcggaaggcgtggtctcaatatgtgtatgtcat
aaagaggctaaggttggtgctggatacacctgtccgaaatgcaaggctcgtgtttgtgag
ctgcccacagaatgtcgtatatgtgggctaacacttgtttcttctccccatttagcaagg
tcatatcatcatctctttccaataacaccgtttgatgaggtatcttttccaaacagaaag
attgccggacagaaatcatatgaaacatgctttggatgcatgcacaatctgatggatcct
gggactggatctggttactgtgttacgtgtccgaaatgcaaaaagtatttctgccttgat
tgtgacatttatattcatgaaagtttgcataattgccccggctgcgagagtttaagacat
tccaattcaatcaatgctggtggatga
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