Spinacia oleracea (spinach): 110794356
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Entry
110794356 CDS
T05137
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03013
Nucleocytoplasmic transport
soe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110794356
03015 mRNA surveillance pathway
110794356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110794356
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110794356
mRNA cycle factors
P-body specific factors
110794356
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
110794356
NCBI-ProteinID:
XP_021855011
UniProt:
A0A9R0K1G4
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Position
4:complement(126083091..126100369)
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AA seq
502 aa
AA seq
DB search
MKEPLNRTKVVVRHLPPSLSHSSFFEQIDGRFSSRYNWSSFRPGKSSHKNQRYARAYLSF
NSHDDVCEFAEFFNGHVFVNEKGTQYKAIVEYAPSQRVPKPNAKKDGREGTIYKDPEFLE
FLEQISKPVENLPSADIQLERREAERAGVQEAPIVTPLMEYVRKRRASRNGNQHLGSDGK
GRGRSGLAPPGRSRSSKQSSEKTKYILKNKGKSTNGKDKSTYIIVSQRENELDASSKKGA
AEYETGSGSHEIIRKKILLLKGKEQEISQVSEGTTLPKVVTTEASSPSVGLKLNQRPDAS
GRIIRSILLNKELRPTQSSSLVLAEQKLQGSNTERSKRPPRPSNMKSGMSASIGEQSPSG
LDYEGKRSVEDKFLGSESHGFSSGREKQDRRTRSRERLDRGVWTPRRSESSISGNENQNN
SSDSYEAKRGDLKYDASVRNIEGIIPAGGRTSSYTENGSHRNFARRAPTHSAKDDGPSKR
GGGVGHGPHEKQVWVQKSASGS
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgaaggagccgcttaatcgaaccaaagtagtggtaaggcacttgcctccgtctctttca
cactcgtctttcttcgagcaaatcgatggccgtttctcttctcgttataattggtcctct
tttcgccctggcaagtctagtcacaagaaccagagatatgctcgggcctatttgagtttt
aacagtcatgatgatgtttgcgagtttgcagagttctttaacggccatgtttttgtcaat
gaaaaggggactcaatataaagctatagttgagtatgctccttctcaacgtgttccaaag
cctaatgccaagaaagatggtcgagaggggacaatttacaaagatccagagttcttggag
ttccttgagcagatttcaaaaccagttgagaatcttcctagtgctgatatacaactggaa
agaagagaagcagaacgagctggcgttcaagaagcacctattgttacaccgctgatggaa
tatgtgcggaagaggagagcttccaggaatggaaatcagcatctagggtcagatggcaag
ggtcgtggacggtctgggttagcacccccagggaggtctcgatcaagcaagcaaagctct
gagaagacaaagtatatcttgaaaaataaagggaagagcacaaatggaaaagacaaatca
acatatattattgtgtctcagagggagaacgaattggatgcttccagcaagaaaggagca
gcagaatatgaaaccggaagtggttctcatgagattataaggaaaaagattctccttttg
aaagggaaagagcaagagatttctcaggtgtctgaaggtactaccctacccaaggttgtt
actactgaagcttcgtcgccttcagttggtttgaaattgaatcagaggcctgatgctagt
ggaagaattattaggagcatattattaaacaaggaacttcgtccaactcagtcatcctca
ttagtcctggcagaacaaaaattgcagggctcaaatactgagaggagcaagcgcccacca
cgaccatccaatatgaaatcaggaatgtcagcctccattggtgaacagtctccttcgggt
ttagactatgagggaaagaggtccgtggaggataaatttctaggaagtgaatcccatggt
ttttcttctggccgtgagaagcaagacagacgcacaagaagtagggagagactagatcgt
ggtgtttggactcctcgtcgttctgaatcatctatttctggcaacgagaatcaaaataat
agttcagattcttatgaagccaaacgcggagatttgaaatatgatgcatctgtccgcaac
atagaaggcataatccctgcaggtggtcgcactagctcttatacagaaaatggctcccat
aggaattttgctcgccgtgctcctacacatagcgctaaggatgatggcccttccaaacgt
ggagggggggttggtcatggtccccacgagaagcaagtgtgggtccagaagtcagcctca
ggttcttaa
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