Spinacia oleracea (spinach): 110796840
Help
Entry
110796840 CDS
T05137
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2 isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03022
Basal transcription factors
soe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110796840
09124 Replication and repair
03420 Nucleotide excision repair
110796840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
soe03021
]
110796840
03400 DNA repair and recombination proteins [BR:
soe03400
]
110796840
Transcription machinery [BR:
soe03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
110796840
DNA repair and recombination proteins [BR:
soe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
110796840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
110796840
NCBI-ProteinID:
XP_021857619
UniProt:
A0A9R0K3Z5
LinkDB
All DBs
Position
6:41816484..41826580
Genome browser
AA seq
451 aa
AA seq
DB search
MPQVKIIAKNFIDMVASLPAVKLDMLYANPFICEAILRSLPPLAKKYVLQMMYIDAPIPA
KSLEEWVLPDGLSKHRVAIDRLIQLRVLSETVDRKKETSYEMNKKFQINLQKQLIHGGIL
PREPMASSSVILPSSEELEIYALEQWEHFLLHLISSNQSEKLTNFSSSMMKVFQRGLLSQ
RDKEASRLTEYGFQFLLMETNAQLWYIIREYIANAEERGVDPANIISFLLELSFHETGQA
YNINTLNEVQLNTIKDLSDLGLVKLQQGRKESWFLPTKLATTLSVSLSDTATRKQGYVVV
ETNFKMYAYSTSKLHCEIMRLFARIEYELPNLIVGAINKESLYNAFDNGITSDQIVSFLQ
QNAHPRVAEKVPTVPENVTDQIRLWESDLNRVEMAPAQFYDEFPSKDLFEAVCDFAREYG
ALLWDDSKKMQLVVKGELHNEMREFLRRQKQ
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaagttaaaattatagccaagaatttcatagacatggttgcatctttgcctgcc
gtcaagctcgatatgctttacgctaaccccttcatatgtgaagccattctcaggtcctta
ccgcctttggcaaagaagtatgtattgcagatgatgtacattgatgctccgatacctgcc
aagtccttggaagagtgggttcttccggatggactctcgaaacatagagttgctatcgat
cgattgattcaactgagggtgctttctgaaactgttgacaggaaaaaggagaccagctat
gaaatgaataaaaagtttcagattaaccttcagaagcagctaatacatggtggaatatta
ccaagggaaccaatggcttcaagttctgtgattcttccaagctcggaggaactagaaatc
tatgctcttgaacagtgggagcatttcctgctgcatcttatcagctcaaaccaatcggaa
aagctaacaaacttcagttcttcaatgatgaaggttttccaacgtggcctcttgagtcaa
agagataaagaagcttcaaggttgactgagtatggcttccagttcctgctgatggaaaca
aatgcacaactttggtatatcatcagggaatatattgccaacgctgaggaacgtggcgta
gatccagcaaatataatttcttttctgctggagcttagttttcacgagacaggacaggca
tacaacatcaacacattgaatgaagttcagcttaatacaatcaaggaccttagtgatttg
ggattagtcaaacttcagcagggaaggaaggagagttggttccttccgacaaagttggct
accaccctttcagtcagcctatcagatacagcaactaggaaacagggttatgtggtagtg
gagacaaacttcaagatgtatgcttattctacgtccaaactacactgtgaaattatgcgt
ctttttgcaaggatagaatacgaacttcctaatctcatcgtgggggcaattaataaagaa
agcttgtataatgcctttgataatggcattacttcagaccagatagtttcatttcttcaa
caaaatgcacatcctcgtgtagctgagaaagtaccaactgttccagaaaatgtcactgat
cagattaggctttgggaatcagatttaaacagagttgaaatggcacctgctcaattttat
gacgaatttccgtctaaggatctatttgaggctgtttgcgactttgcacgggaatatgga
gctctgttgtgggatgattcgaaaaagatgcagcttgtagtaaaaggcgagctgcataat
gaaatgcgtgaatttctccgccgccagaaacaatag
DBGET
integrated database retrieval system
