Serratia odorifera: NCTC11214_04897
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Entry
NCTC11214_04897 CDS
T06612
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sof
Serratia odorifera
Pathway
sof03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC11214_04897 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sof03400
]
NCTC11214_04897 (mfd)
Enzymes [BR:
sof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC11214_04897 (mfd)
DNA repair and recombination proteins [BR:
sof03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC11214_04897 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
VDZ64287
UniProt:
A0A3S4DSQ1
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All DBs
Position
1:4476787..4480266
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AA seq
1159 aa
AA seq
DB search
MSNSDNRSRSASDSSRYTLPERAGDLRQLGQLTGSACAVECAEIIERHNGPVMLIAPDMQ
NALRLRDEIQQFTDQMVSTLSDWETLPYDSFSPHQEIISARLSSLYHLPTMARGVIILPV
NTLMQRVCPHEFLHGHALVMQKGQRLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLD
LYPMGSEEPYRIDFFDDEIDSLRIFDVDSQRTLSEVEAINLLPAHEFPTDKNAIELFRSQ
WREQFEVRRDAEHIYQQVSKGTWPAGIEYWQPLFFSQPLPSLFSYLPDNTLIVNTGNLES
AAERFWQDVNQRYDSRRVDPMRPLVAPENLWLRVDSLFAELKAWPRIALKTEALPKKAGN
TNLGYQTLPDLAIQAQQKAPLDNLRRFIEGFDGSVIFSVESEGRRETLQDLLGRIKLNAS
LIQRLEQAEPAGRYMMVGASERGFLDGLRQRALICESDLLGERVNRRRQDNRRTINTDTL
IRNLAELHPGQPVVHLEHGVGRYVGLTTLEAGGIKAEYLILSYAGDDKLYVPVSSLHLIS
RYAGGADESAPLHKLGGDAWTRARQKAAEKVRDVAAELLDIYAQRAAKSGYAFKHDREQY
QLFCQTFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENGK
QVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMMSRFRSAKEQQQVLDDAADGKVDIVIGT
HKLLQSDLRWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM
RDLSIIATPPARRLAVKTFVREYDSLVVREAILREVLRGGQVYYLYNDVENIDKAAQRLA
ELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADR
FGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSADAHKRLEAIATLEDLGAGFALATHDL
EIRGAGELLGEDQSGQMTTIGFSLYMELLESAVDALKHGREPSLEDLTSSQTEVELRMPA
LLPDDFIPDVNTRLSFYKRVASAKNEGELEELKVELIDRFGKLPDAARNLLHSAALRQRA
QTLGIKRIEGNERGGFIEFGDKNRVDPGYLIGLLQSKPQVYRLDGPAKLKFMLDLGDRSK
RLTFIDELLTAFREHTLAA
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgagcaattctgataatcgtagccgttccgcgtccgactcttcccgttacaccctgccc
gagcgtgcgggcgatctgcgccaactggggcagttgaccggctcggcctgtgcggtcgaa
tgtgcggaaattatcgagcgccataatggtccggtaatgctgatcgcgccggatatgcaa
aatgccctgcgtctgcgcgacgaaattcagcagttcaccgaccagatggtcagtacgctg
tcggattgggaaacgctgccgtacgacagcttctcgccgcatcaggaaattatctcggcg
cgcctgtccagcctgtatcatctgcctaccatggcgcgcggcgtgatcattctcccggta
aatacgctgatgcagcgcgtctgtccgcatgagtttctgcacggccatgcgctggtgatg
caaaaaggccagcgcctgtcacgcgacaaattacgcgcgcagttggaacaggccggctat
cgcagcgtcgatcaggtaatggaacacggggaattcgccacgcgcggcgctctgctggat
ttatacccgatgggcagcgaagaaccttaccgcattgatttcttcgatgatgaaatcgac
agcctgcgcatcttcgacgttgacagccaacgcacgctgagcgaggttgaggcgatcaat
ctgctgccggctcacgaattccccaccgacaaaaacgccatcgaactgttccgcagccaa
tggcgcgaacagttcgaggtgcgccgcgacgccgaacacatctaccagcaggtcagcaaa
ggcacctggccggccggcatcgaatattggcagccgctgttcttcagccagccactgccg
tcgttgttcagttacctgccggacaacaccctgatcgtcaacaccggcaatctggaaagc
gccgccgagcgtttctggcaggacgtcaatcagcgttatgacagccggcgcgttgaccca
atgcgcccgctggtggcgccggaaaacctgtggctgcgggtcgacagcctgtttgccgaa
ctgaaggcctggccgcgcatcgcgctgaaaaccgaagcgttgcccaaaaaagccggcaat
accaatctgggctatcagacgttgccggatctggcgattcaagcgcagcaaaaggcgccg
ctggacaatctgcggcgctttatcgaaggcttcgacggcagcgtgattttttcggtggaa
agcgaggggcggcgcgaaacgctgcaagacctgctcggccgcatcaagctcaacgccagc
ctgatacagcggctcgaacaggctgaaccggcaggccgctatatgatggtcggcgcgtcc
gaacgcgggttccttgatggcctgcgccagcgggcgctgatctgtgagagcgatttgctc
ggcgaacgcgtcaaccgacgtcgtcaggacaatcgccgcaccatcaataccgatacgctg
atccgtaacctggcagagctgcacccagggcagccggtggtgcatctggaacacggcgtc
gggcgctacgtcggcctgacaacgctggaggccggcggcatcaaggccgaataccttatt
ctctcctacgccggcgacgacaagctgtacgtgccggtatcatcgctacatctgatcagt
cgctatgccggcggtgccgatgaaagcgcgccactgcataaactggggggcgatgcctgg
acccgtgcacgacagaaagcggcggaaaaagtgcgcgacgtggccgccgagctgctggat
atttatgcccagcgtgcggcgaagagcggctatgccttcaagcatgaccgcgaacagtat
cagctgttctgccaaaccttcccgttcgaaaccaccccggaccaggagcaggcgatcaat
gccgtgttgagcgacatgtgccagccgctggccatggaccgtctggtgtgtggcgacgtg
ggtttcggcaagaccgaagtggcaatgcgcgccgccttcctggcggtagaaaacggcaaa
caggtggcggtattggtgccaaccacgctgctggcgcagcagcacttcgataacttccgc
gatcgcttcgccacctggccagtccgcattgaaatgatgtcgcgtttccgcagcgccaaa
gagcagcagcaggtgctggacgatgccgcagacggtaaggtcgatatcgtcatcggcact
cataaactgttgcagagcgatttgcgctggaaagatctcggtctgttgatcgttgacgaa
gaacaccgctttggcgtgcgccataaagagcgtattaaggccatgcgtgccgacgtcgat
atcctgacgctgaccgccacgccaatcccacgcaccctgaacatggcgatgagcggcatg
cgcgatctgtcgatcatcgcaacgccgccggcgcgccgtctggcggtgaaaaccttcgtg
cgcgaatacgatagcctggtggtacgcgaggcgattttgcgtgaagtgctgcgtggcgga
caggtttattatctgtacaacgacgtagagaacattgacaaggccgcgcaacgattggca
gagctggtgccggaagcgcgtattgccattggccatggtcagatgcgcgaacgcgatctg
gaacgggtgatgaacgatttccaccaccagcgtttcaacgtgctggtctgtactaccatt
attgaaaccggtatcgatattcccagcgccaataccatcatcatcgagcgtgccgaccgt
ttcgggctggcgcaattacatcagcttcgtggccgcgttggccgctcgcatcaccaggcc
tacgcctacctgctgacaccgaatccgaaggcgatgagcgctgacgcacacaaacgactg
gaagcgatcgccaccttggaggatctcggtgccggctttgcgctggcgacccacgatctg
gaaattcgcggtgccggcgagctgctgggcgaagaccagagtggccagatgaccaccatc
ggcttctcgttgtatatggaactgctggaaagcgcggtggacgcgctaaaacacggccgc
gaaccgtcactggaagatttgaccagcagccagaccgaagtggaactgcgcatgccagcg
ttgttgccggatgatttcattcctgacgtaaatactcgcctgtcattctataagcgtgtt
gccagtgcgaaaaacgaaggggagctggaagagctgaaagtcgagctgatcgaccgtttc
ggcaagttgccggacgcggcgcgcaatctgttgcacagcgcggcgttgcgccagcgtgca
caaaccctgggtatcaagcgcatcgaaggtaacgagcgcggtggatttatcgagtttggc
gacaaaaatcgcgtcgaccccggctatctgattggcctgttgcaaagcaaaccgcaggtt
taccgtctggatggtcccgccaagctgaagtttatgctcgacctgggcgatcgcagcaag
cggttgacgtttatcgacgagttactgacggcgttccgcgagcatacgctagcggcatga
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